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View Structure Prediction Details

Protein: CG10419-PA, FBpp...
Organism: Drosophila melanogaster
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10419-PA, FBpp....

Description E-value Query
Range
Subject
Range
gi|27819903 - gi|27819903|gb|AAL39848.2| LD47479p [Drosophila melanogaster]
337.0 [0..1] [245..22]
GEMI2_MOUSE - Gem-associated protein 2 OS=Mus musculus GN=Gemin2 PE=2 SV=1
314.0 [0..6] [243..11]
gi|156717376, gi... - gi|156717376|ref|NP_001096228.1| hypothetical protein LOC100124782 [Xenopus (Silurana) tropicalis], ...
313.0 [0..1] [243..1]
GEMI2_XENLA - Gem-associated protein 2 OS=Xenopus laevis GN=gemin2 PE=2 SV=1
307.0 [0..9] [243..1]
gi|55640643 - gi|55640643|ref|XP_509917.1| PREDICTED: SMN-interacting protein 1 isoform 5 [Pan troglodytes]
SIP1 - survival of motor neuron protein interacting protein 1
301.0 [0..6] [243..22]
gi|109083413 - gi|109083413|ref|XP_001092707.1| PREDICTED: similar to SMN-interacting protein 1 isoform alpha isofo...
gi|11182456 - gi|11182456|emb|CAC16117.2| survival interacting protein 1 [Homo sapiens]
300.0 [0..6] [243..11]
GEMI2_RAT - Gem-associated protein 2 OS=Rattus norvegicus GN=Gemin2 PE=2 SV=1
295.0 [0..6] [243..11]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHEPEDQTF QLQALEICEP DSSFDPQKPP ESGEEYLMHM FYERKRCPAV VTKRSSKIRN  60
   61 NTGNTTLEML DNPELPPFKC LLPTPEWRDE QVKSFQAARS QVLVLRKELA NNNYDQSGEP 120
  121 PLTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQEKWKEFCR NQQPLLSTLL HLTQNDLELL LEMLSKWLQD PNTTVDLLHD VWLARWLYAT  60
   61 LVCLHLPLEP HVFSTLRYIA RTCIHLRNQL KEDEVQRAAP YNLLLTLTVQ VFAQNDFKDY 120
  121 I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.830 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle