YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL14-PA
Organism:	Drosophila melanogaster
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL14-PA.

Description	E-value	Query Range	Subject Range
gi\|114586294 - gi\|114586294\|ref\|XP_001135032.1\| PREDICTED: similar to Ribosomal protein L14 [Pan troglodytes]	205.0	[0..1]	[166..95]
gi\|114145740, gi... - gi\|62661762\|ref\|XP_224414.3\| PREDICTED: similar to LRRGT00066 [Rattus norvegicus], gi\|37361818\|gb\|AA...	193.0	[0..4]	[134..145]
gi\|60677709 - gi\|60677709\|gb\|AAX33361.1\| RH72463p [Drosophila melanogaster]	188.0	[0..1]	[154..12]
gi\|12846159 - gi\|12846159\|dbj\|BAB27053.1\| unnamed protein product [Mus musculus]	184.0	[0..1]	[134..1]
gi\|61372106 - gi\|61372106\|gb\|AAX43786.1\| ribosomal protein L14 [synthetic construct]	182.0	[0..1]	[166..1]
gi\|195173468, gi... - gi\|195173468\|ref\|XP_002027513.1\| GL10322 [Drosophila persimilis], gi\|194114414\|gb\|EDW36457.1\| GL1032... gi\|125978158, gi... - gi\|54641863\|gb\|EAL30613.1\| GA19471 [Drosophila pseudoobscura pseudoobscura], gi\|125978158\|ref\|XP_001... gi\|54641863\|gb\|E... - GA19471-PA [Drosophila pseudoobscura], GA19471 [Drosophila pseudoobscura pseudoobscura]	182.0	[0..1]	[154..1]
gi\|12653649, gi\|... - ref\|NP_003964.2\| ribosomal protein L14 [Homo sapiens], gi\|12653649\|gb\|AAH00606.1\| Ribosomal protein... gi\|123996859, gi... - gi\|60655201\|gb\|AAX32164.1\| ribosomal protein L14 [synthetic construct], gi\|123996859\|gb\|ABM86031.1\| ...	182.0	[0..1]	[166..1]
gi\|148227832, gi... - gi\|46329783\|gb\|AAH68892.1\| MGC83076 protein [Xenopus laevis], gi\|148227832\|ref\|NP_001084724.1\| hypot...	181.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFERFVQTG RIAKASAGPL KGRLVAIVDV IDQNRVLVDG PLTGVPRQEY RLNNLHLTKY  60
   61 RIKFPYTAPT RIVRKAWTES DLKAQWKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2joyA
Description:	No description for 2joyA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
binding	1.64219262839972	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
nucleic acid binding	1.35678179370806	bayes_pls_golite062009
transcription regulator activity	1.26877481073647	bayes_pls_golite062009
DNA binding	0.809544484035708	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
protein binding	0.196068293929372	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009
transcription factor activity	0.145799514762697	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [89-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPWSVKAQNI CKRSSLNDFD RFKLRYAKRQ RNKLLTIAFN TLKKRTKADG TPRVLKKDRR  60
   61 ERLRAEKAKG GKKAAAKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: