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View Structure Prediction Details

Protein: RpL14-PA
Organism: Drosophila melanogaster
Length: 166 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL14-PA.

Description E-value Query
Range
Subject
Range
gi|114586294 - gi|114586294|ref|XP_001135032.1| PREDICTED: similar to Ribosomal protein L14 [Pan troglodytes]
205.0 [0..1] [166..95]
gi|114145740, gi... - gi|62661762|ref|XP_224414.3| PREDICTED: similar to LRRGT00066 [Rattus norvegicus], gi|37361818|gb|AA...
193.0 [0..4] [134..145]
gi|60677709 - gi|60677709|gb|AAX33361.1| RH72463p [Drosophila melanogaster]
188.0 [0..1] [154..12]
gi|12846159 - gi|12846159|dbj|BAB27053.1| unnamed protein product [Mus musculus]
184.0 [0..1] [134..1]
gi|61372106 - gi|61372106|gb|AAX43786.1| ribosomal protein L14 [synthetic construct]
182.0 [0..1] [166..1]
gi|195173468, gi... - gi|195173468|ref|XP_002027513.1| GL10322 [Drosophila persimilis], gi|194114414|gb|EDW36457.1| GL1032...
gi|125978158, gi... - gi|54641863|gb|EAL30613.1| GA19471 [Drosophila pseudoobscura pseudoobscura], gi|125978158|ref|XP_001...
gi|54641863|gb|E... - GA19471-PA [Drosophila pseudoobscura], GA19471 [Drosophila pseudoobscura pseudoobscura]
182.0 [0..1] [154..1]
gi|12653649, gi|... - ref|NP_003964.2| ribosomal protein L14 [Homo sapiens], gi|12653649|gb|AAH00606.1| Ribosomal protein...
gi|123996859, gi... - gi|60655201|gb|AAX32164.1| ribosomal protein L14 [synthetic construct], gi|123996859|gb|ABM86031.1| ...
182.0 [0..1] [166..1]
gi|148227832, gi... - gi|46329783|gb|AAH68892.1| MGC83076 protein [Xenopus laevis], gi|148227832|ref|NP_001084724.1| hypot...
181.0 [0..1] [138..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFERFVQTG RIAKASAGPL KGRLVAIVDV IDQNRVLVDG PLTGVPRQEY RLNNLHLTKY  60
   61 RIKFPYTAPT RIVRKAWTES DLKAQWKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2joyA
Description: No description for 2joyA was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
binding 1.64219262839972 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
nucleic acid binding 1.35678179370806 bayes_pls_golite062009
transcription regulator activity 1.26877481073647 bayes_pls_golite062009
DNA binding 0.809544484035708 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
protein binding 0.196068293929372 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
transcription factor activity 0.145799514762697 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [89-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPWSVKAQNI CKRSSLNDFD RFKLRYAKRQ RNKLLTIAFN TLKKRTKADG TPRVLKKDRR  60
   61 ERLRAEKAKG GKKAAAKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle