YRC Public Data Repository - Protein Structure Prediction

Protein:	levy-PA, FBpp0309930
Organism:	Drosophila melanogaster
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for levy-PA, FBpp0309930.

Description	E-value	Query Range	Subject Range
gi\|194114038, gi... - gi\|195154665\|ref\|XP_002018242.1\| GL16869 [Drosophila persimilis], gi\|194114038\|gb\|EDW36081.1\| GL1686... gi\|54636267, gi\|... - gi\|54636267\|gb\|EAL25670.1\| GA14437 [Drosophila pseudoobscura pseudoobscura], gi\|125809378\|ref\|XP_001... gi\|125809378\|ref... - GA14437-PA [Drosophila pseudoobscura], GA14437 [Drosophila pseudoobscura pseudoobscura]	170.0	[0..1]	[109..1]
gi\|38048357, gi\|... - gi\|38048357\|gb\|AAR10081.1\| similar to Drosophila melanogaster CG17280 [Drosophila yakuba], gi\|195489...	170.0	[0..1]	[109..1]
gi\|56204926, gi\|... - gi\|56204926\|emb\|CAI20472.1\| novel protein similar to cytochrome c oxidase subunit VIa polypeptide 1 ...	166.0	[0..1]	[108..1]
gi\|114607227, gi... - gi\|55626522\|ref\|XP_518442.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-live...	163.0	[0..1]	[108..1]
CX6A1_RABIT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1	159.0	[0..1]	[108..1]
gi\|13277855, gi\|... - gi\|74151378\|dbj\|BAE38808.1\| unnamed protein product [Mus musculus], gi\|6680988\|ref\|NP_031774.1\| cyto...	157.0	[0..2]	[108..4]
gi\|109098951 - gi\|109098951\|ref\|XP_001088806.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide ...	156.0	[0..1]	[108..1]
CX6A1_RAT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2	156.0	[0..2]	[108..3]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAILNHAIR RQFGASAARN MSGTAAVAGE HSGGYKVWKR LSFFVAVPAV GLCMLNAYLK  60
   61 HQEEHDKPRQ EFVKYDYLRR REKRFPWGEG QKSLFHNPHV NALPDGYEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1occG
Description:	Mitochondrial cytochrome c oxidase subunit VIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	12.2317532545955	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	12.2317532545955	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.9189904362651	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.77104248101315	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.61858135414369	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.0189825255034	bayes_pls_golite062009
oxidoreductase activity	4.93709142475202	bayes_pls_golite062009
cation transmembrane transporter activity	4.77145907631723	bayes_pls_golite062009
ion transmembrane transporter activity	4.57436007698077	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.16699951799043	bayes_pls_golite062009
substrate-specific transporter activity	3.97113110639524	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: