| Protein: | MED16-PA |
| Organism: | Drosophila melanogaster |
| Length: | 818 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED16-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1280.0 | [0..1] | [818..1] |
|
Region A: Residues: [1-688] |
1 11 21 31 41 51
| | | | | |
1 MTILYKVEGK EFSKDSVFPH KKVLCSVSAR NIVAFSALQS AIFPASHGGD AGDGSLPGAG 60
61 LAVGASNSHV YVCDIVTPWE YYKVCSSKSL ISVLQWSPNG EQLLLGYVGG RVEIWQPRNQ 120
121 SINLWVLQYY ATVPSEDIIE AQFFQNGKGV IFNALKKDHT YYAEKFERVE QQRPTLSGFG 180
181 GVASEGCVLL TSSGLLAAFS LPAIQKTSAA GADGPAHEVV ELTPALHSIG ISRSFIEHCS 240
241 MTPSPSGALN IAFSCGWQQQ LVQCFKVSLS LEGELGLEQH LAIKSESQTS IFLGPLDGRR 300
301 ISHLKWTRIA NEDVIFIAYA CPDGAGSQLE QWTLTRRHQS VHALLQGGGG ANNKPNEFVQ 360
361 SESWEQVGKV QLNASLADIS VTRLSVSTPD SCQVYAILQD NSVQVLEPNS MKQLNHTQFD 420
421 RLSDASGAVK FVSGDLTPSS QILLIFDSHA QLYAMQAPLP KQGGSGLLLL EYCIVTGCDA 480
481 SDVLLLNLGN LEALVEKLTD NFTRQPSFVR HFYYANFLAL KSNICRMQQQ EFDNLIILHA 540
541 ISTTFKSLLR PSDLGFQDKG PADNLAIKLA ESIPDVDTVM LNLDAKDFTV EPVMLQSLQQ 600
601 LIQWVTDLAL NMLHRLPEEV MKTKLSGKRP SYDISRDIVA ISSLRELLVM IRIWGLLNTQ 660
661 CLPVYTKTMD NIDVLVILFR LLTRLAQN
|
| Detection Method: |  |
| Confidence: | 0.977 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.60759822784178 | bayes_pls_golite062009 |
| binding | 2.38386546684697 | bayes_pls_golite062009 |
| transcription regulator activity | 2.36560618519891 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30172153305516 | bayes_pls_golite062009 |
| transcription initiation factor activity | 2.27070335649585 | bayes_pls_golite062009 |
| DNA binding | 1.74970945772818 | bayes_pls_golite062009 |
| protein binding | 1.14503622489775 | bayes_pls_golite062009 |
| transcription factor activity | 1.10790917305704 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.673044943383302 | bayes_pls_golite062009 |
| 0.648807338780975 | bayes_pls_golite062009 | |
| transcription repressor activity | 0.561205988591905 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.530674315734974 | bayes_pls_golite062009 |
| transcription factor binding | 0.421428497325728 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.295072505361604 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.203779337313278 | bayes_pls_golite062009 |
| chromatin binding | 0.0857162436144714 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.00328955300255629 | bayes_pls_golite062009 |
|
Region A: Residues: [689-818] |
1 11 21 31 41 51
| | | | | |
1 PAEPDEMLLD ECSLLSKQLL IPQPTKFNPT TLLSAQGFAA VKSGQLQFTS MEEPTCLQDM 60
61 ETEEVVFASS VKDGVSNLQL GARPSHIRRC ARCGFVFVNN ASKVAKTSAL KAWFSKWLHC 120
121 HCGGFWKQVH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
