| Protein: | a-PC, a-PA, a-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1329 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for a-PC, a-PA, a-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
570.0 | [0..50] | [1328..1] |
|
Region A: Residues: [1-239] |
1 11 21 31 41 51
| | | | | |
1 MRLFKTRKST DTYSTLAAQQ QQQQQQQQQH QAEGSNISHS SNSSSNKSHT PATCSNRLNK 60
61 SIVSSTSISS SLPDLHDKSP VMILSCTTLA SNGATATAAV TATATGTAAT SGGSLQQQQQ 120
121 QHLQHQQQQQ PLRTATPTCL LSGRQTPSAI SVMSLQEATS LHRQQQQPHQ PPTIYVPVPT 180
181 KLGNNVNTGN SSATLLLSYG STSSIANLQQ QQQQHAAQYQ QYVAQRLHAA SSSCLYEKG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [240-349] |
1 11 21 31 41 51
| | | | | |
1 SNASGGASSN KSSLSLTPNG HLPDYKLVTA MPVVVLDDEH KSNSLPATEA SRNSNSSSNM 60
61 NGSSNSNSLD VSNSNSHSGS STSLASTTRN VFTWGKRMSR KLDLLKRSDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [350-538] |
1 11 21 31 41 51
| | | | | |
1 PAAAHKSHSD LRSLFHSPTH HKSGSGGSSG PSSAKASASP TGGHQNSSGS TTSTLKKCKS 60
61 GPIETIKQRH QQQQQQQQSV QDVGTGQSQS AQSTPTHQFQ AAARPQKALK NFFHRIGSTG 120
121 MLNHRSHNLL KASEAAQQAT PAATTLYRSS STSQLSSSSY VKCDDPTEGL NLQREQREQR 180
181 LPRIASLKS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [539-749] |
1 11 21 31 41 51
| | | | | |
1 SSCDDIAKVS SCLTASTSSG SAAGSLGSPP SSAAAGGGGT ANSGQHDPSR RGAFPYAFLR 60
61 SRLSVLPEEN HGNVPGHLKQ QIQRQREQHQ QHQRDLLQQE QTSSPLPQRR SPEQAMLNNV 120
121 SRNDSITSKD WEPLYQRLSS CLSSNESGYD SDGGATGARL GNNLSISGGD TESIASGTLK 180
181 RNSLISLSSS EGVGMGMGMS LGLGAPSTRN S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [750-895] |
1 11 21 31 41 51
| | | | | |
1 SICSAPVSLG GYNYDYETET IRRRFRQVKL ERKCQEDYIG IVLSPKTVMT NSNEQQYRYL 60
61 IVELEPYGMA QKDGRLRLGD EIVNVNGKHL RGIQSFAEVQ RLLSSFVDNC IDLVIAHDEV 120
121 TTVTDFYTKI RIDGMSTQRH RLSYVQ
|
| Detection Method: | |
| Confidence: | 16.69897 |
| Match: | 1ueqA |
| Description: | Solution Structure of The First PDZ domain of Human Atrophin-1 Interacting Protein 1 (KIAA0705 protein) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.3816879009135 | bayes_pls_golite062009 |
| binding | 2.18285297573892 | bayes_pls_golite062009 |
| receptor binding | 0.237609767198544 | bayes_pls_golite062009 |
| protein domain specific binding | 0.16193472434519 | bayes_pls_golite062009 |
|
Region A: Residues: [896-1110] |
1 11 21 31 41 51
| | | | | |
1 RTQSTDSLSS MQSLQLQQER IQGHNTEQEQ EAQGEDQCDA RSMASVSTMP TPMPLMQHRR 60
61 SSTPRHSLDV GAPEHELLRR RARSSSGQRS LALTPTPLFA SGSSSCSSSP NHRLLDNEND 120
121 PANDTDSYTP VYANRAASVC VASSLADDEK WQLLARKRCS EGSALSATPN PQQFGQRTHY 180
181 ARNSINLANS HYRSLRFAHS RLSSSRLSLF MQAPP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1111-1208] |
1 11 21 31 41 51
| | | | | |
1 NSLTVGEGVA NTPSSTATTT TDLTNQQQQQ QNQQQTHQSL YIKHSPKSVS LFSPNPYVNA 60
61 SSSPASASTS AGAGSSLAPP AAALMHHRPS LPVAKLTI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1209-1329] |
1 11 21 31 41 51
| | | | | |
1 RDEEMAEVIR ASMSEGSGRC TPKTITFFKG PGLKSLGFSI VGGRDSPKGN MGIFVKTVFP 60
61 SGQAADDGTL QAGDEIVEIN GNSVQGMSHA ETIGLFKNVR EGTIVLKILR RKLQKAKSMG 120
121 C
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 2fneA |
| Description: | The crystal structure of the 13th PDZ domain of MPDZ |
Matching Structure (courtesy of the PDB): |
|
