| Protein: | Sara-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1343 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sara-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
990.0 | [0..1] | [1343..1] |
|
Region A: Residues: [1-470] |
1 11 21 31 41 51
| | | | | |
1 MDLVDIDQVL DNLELSIAAD EQLSRNAAAA AAAGANPGRF LGDGASASIS GVGAGAGVSG 60
61 AAGVTPTPAS GKSFVGVSQV FNSLDDYREN VKSLQVDAQL PSYDWQTEAE HEDDIHKFSE 120
121 QASKNNGQTI VSSSESLTTS SCSTFSSGPS PVSNGSHSEE LATPPEDEKT SEVQVEPKEQ 180
181 DQQPEQVKHE DQHQDQAVPP PTQSKQTVEE LAVGLSSISI TASGTESQSL LPEEVTASSV 240
241 LGQVLEELSE ESSPSREPET EMTNGIDVPL ANLPASVAEV PVPKEMEQPV QTEEEDVELP 300
301 QEQHPRRSQP LTFCSTMDEI SDTELDSMLQ EMDADDNQAD DQQMPDDEKS CSASPVTEEE 360
361 SVRILSDEQE TTSNDQMNVD NFSQASTVEF ADLKQPESTP VTAMGEDVAS SFSSTESDSL 420
421 SGRKLDGEVE VDREHEDASL ATDALETQEQ RPQRPQTLNL NGCQAESSTP
|
| Detection Method: |  |
| Confidence: | 4.045757 |
| Match: | 1ciiA |
| Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [471-607] |
1 11 21 31 41 51
| | | | | |
1 SQDENPEIQQ ETLQPTEVRE GAAGVGVIPG EDDEESPIYE AVGYSDPHAN LGKVPPIWVP 60
61 DNMAGQCMQC QQKFTMIKRR HHCRACGKVL CSVCCSQRFR LEFATEPESR VCVQCYMILS 120
121 ERQANGLNSE SAPGSAL
|
| Detection Method: | |
| Confidence: | 3.54 |
| Match: | 1dvpA |
| Description: | Hrs |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.41213967358615 | bayes_pls_golite062009 |
| protein binding | 1.32925779020231 | bayes_pls_golite062009 |
| transcription regulator activity | 0.465878991370073 | bayes_pls_golite062009 |
| DNA binding | 0.380632099574102 | bayes_pls_golite062009 |
| nucleic acid binding | 0.270854881856333 | bayes_pls_golite062009 |
|
Region A: Residues: [608-690] |
1 11 21 31 41 51
| | | | | |
1 PPTPIRSPNP NNPMEYCSTI PPHRQVANSP GAPPPSVIVP VGVLKKTDGS SSNSSSSDGQ 60
61 KGQRKRKSVM FSDGIAPGSE LAS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [691-844] |
1 11 21 31 41 51
| | | | | |
1 TMEQQWGESK HSRRGLSRSG SGAGQKPPTP ATEEPPRSID TSSTLGLVAQ LFRGSIPPSA 60
61 AAATLSATET SAGRSSSQSQ AQTSPRRKAE SSRNRKLPPN GDAQGCYLPP EENGLPPICI 120
121 SSKEGGEVDY KVVRNDGSLL DRLQNETLKF IIKN
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1zvuA |
| Description: | Structure of the full-length E. coli ParC subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [845-932] |
1 11 21 31 41 51
| | | | | |
1 NFFVLVKIVN MSCCMNRWVL NFTTSGLHHM GSDELIILLE IKQPKQEEYV KGEVAIPKDL 60
61 FQHLYEIYVE AEHARSGTHE LAFTSPRN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [933-1079] |
1 11 21 31 41 51
| | | | | |
1 ANFLGSREHG GFIFIRPTYQ CLQGVIVPDN PYLVGVLIHR HEVPWAKVLP LRLILRLGAQ 60
61 YRYYPCPLIS VRGRESVYGE IAQTIINFLV DFRNYSYSLP AIRGLYIHME DRQTTVIIPK 120
121 YRQQDVIKAI NNASDHILAF AGNFSKV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1080-1196] |
1 11 21 31 41 51
| | | | | |
1 ADGHLVCMQN INDDRSEMYS YSTQAINIQG QPRKITGASF FVLNEALKSS SGLSGKCSIV 60
61 EDGLMVQIMP AKMEEVRQAL RNQNDIDIVC GPIDATDDQS EIVSIKWVDN NRDINVG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1197-1343] |
1 11 21 31 41 51
| | | | | |
1 VKSPIDDQPM DGISNMRVLK WASFNYSNTN YAIRLSDIYI IKCEDWYATN GGNCEEITRI 60
61 AEQLARSASM ALLPLLDLLA AAGINKLGLR ATLDQDNVGY EAGARGSKLP PLYMNALDNH 120
121 LIATLHGESS GIQEPIILEL IFYILNA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
