| Protein: | sm-PE, sm-PA |
| Organism: | Drosophila melanogaster |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sm-PE, sm-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
248.0 | [0..84] | [474..12] |
|
Region A: Residues: [1-220] |
1 11 21 31 41 51
| | | | | |
1 MPYNGASNGS GASGAGGGGA TIVVTEGPQN KKIRTGVQQP GENDVHMHAR STPQQNQQQA 60
61 LMNKSNDDLR RKRPETTRPN HILLFTIINP FYPITVDVLH KICHPHGQVL RIVIFKKNGV 120
121 QAMVEFDNLD AATRARENLN GADIYAGCCT LKIDYAKPEK LNVYKNEPDT SWDYTLSTEP 180
181 PLLGPGAAFP PFGAPEYHTT TPENWKGAAI HPTGLMKEPA
|
| Detection Method: |  |
| Confidence: | 11.69897 |
| Match: | 2e5iA |
| Description: | No description for 2e5iA was found. |
|
Region A: Residues: [221-475] |
1 11 21 31 41 51
| | | | | |
1 GVVPGRNAPV AFTPQGQAQG AVMMVYGLDH DTSNTDKLFN LVCLYGNVAR IKFLKTKEGT 60
61 AMVQMGDAVA VERCVQHLNN IPVGTGGKIQ IAFSKQNFLS EVINPFLLPD HSPSFKEYTG 120
121 SKNNRFLSPA QASKNRIQPP SKILHFFNTP PGLTEDQLIG IFNIKDVPAT SVRLFPLKTE 180
181 RSSSGLIEFS NISQAVLAIM KCNHLPIEGK GTKFPFIMKL CFSSSKSMNG AWNNAASEGM 240
241 IEKENEVDTK VDIYN
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| transporter activity | 0.00947930769815086 | bayes_pls_golite062009 |
