| Protein: | pAbp-PB, pAbp-PA... |
| Organism: | Drosophila melanogaster |
| Length: | 634 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pAbp-PB, pAbp-PA....
| Description | E-value | Query Range |
Subject Range |
|
|
537.0 | [0..1] | [633..10] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MASLYVGDLP QDVNESGLFD KFSSAGPVLS IRVCRDVITR RSLGYAYVNF QQPADAERAL 60
61 DTMNFDLVRN KPIRIMWSQR DPSLRRSGVG NVFIKNLDRA IDNKAIYDTF SAFGNILSCK 120
121 VATDEKGNSK GYGFVHFETE EAANTSIDKV NGMLLNGKKV YVGKFIPR
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| 4.45006565905155 | bayes_pls_golite062009 | |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.79052809544187 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| poly(U) RNA binding | 2.49013736906028 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| hydrolase activity | 1.59923957614061 | bayes_pls_golite062009 |
| snRNA binding | 1.44241647066188 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| transcription activator activity | 1.02778561397221 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.597542453741953 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.290135317640781 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [169-282] |
1 11 21 31 41 51
| | | | | |
1 KEREKELGEK AKLFTNVYVK NFTEDFDDEK LKEFFEPYGK ITSYKVMSKE DGKSKGFGFV 60
61 AFETTEAAEA AVQALNGKDM GEGKSLYVAR AQKKAERQQE LKRKFEELKQ KRHE
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
|
Region A: Residues: [283-406] |
1 11 21 31 41 51
| | | | | |
1 SVFGVNLYVK NLDDTIDDDR LRIAFSPYGN ITSAKVMTDE EGRSKGFGFV CFNAASEATC 60
61 AVTELNGRVV GSKPLYVALA QRKEERKAHL ASQYMRHMTG MRMQQLGQIY QPNAASGFFV 120
121 PTLP
|
| Detection Method: | |
| Confidence: | 4.49 |
| Match: | 1h2tZ |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.32219487559982 | bayes_pls_golite062009 |
| mRNA binding | 4.87640532914983 | bayes_pls_golite062009 |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| 4.22120207254226 | bayes_pls_golite062009 | |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| structural molecule activity | 2.79390010162962 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.55628738360472 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.38400992482878 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| poly(U) RNA binding | 2.13305841145089 | bayes_pls_golite062009 |
| protein binding | 2.10850948869511 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| hydrolase activity | 1.62800695894716 | bayes_pls_golite062009 |
| snRNA binding | 1.15643072278378 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| transcription repressor activity | 1.07516027015942 | bayes_pls_golite062009 |
| transcription activator activity | 1.03081648377979 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.633093884585572 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.468183942177665 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.462558743683805 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
| translation regulator activity | 0.246220338604608 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.0127733116412899 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.00409932271658597 | bayes_pls_golite062009 |
|
Region A: Residues: [407-563] |
1 11 21 31 41 51
| | | | | |
1 SNQRFFGSQV ATQMRNTPRW VPQVRPPAAI QGVQAGAAAA GGFQGTAGAV PTQFRSAAAG 60
61 ARGAQPQVQG THAAAAAANN MRNTGARAIT GQQTAAPNMQ IPGAQIAGGA QQRTSNYKYT 120
121 SNMRNPPVPQ LHQTQPIPQQ LQGKNSEKLI ASLLANA
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [564-634] |
1 11 21 31 41 51
| | | | | |
1 KPQEQKQILG ERLYPMIEHM HANLAGKITG MLLEIENSEL LHMIEDQEAL KAKVEEAVAV 60
61 LQVHRVTEPA N
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
