| Protein: | stau-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1026 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stau-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
573.0 | [0..1] | [1026..1] |
|
Region A: Residues: [1-228] |
1 11 21 31 41 51
| | | | | |
1 MQHNVHAARP APHIRAAHHH SHSHAHMHLH PGMEQHLGPS LQQQQQPPPP PQQPPHRDLH 60
61 ARLNHHHLHA QQQQQQQTSS NQAGAVAAAG AAYHHGNINS NSGSNISSNS NQMQKIRQQH 120
121 QHLSSSNGLL GNQPPGPPPQ AFNPLAGNPA ALAYNQLPPH PPHHMAAHLG SYAAPPPHYY 180
181 MSQAKPAKYN HYGSNANSNS GSNNSNSNYA PKAILQNTYR NQKVVVPP
|
| Detection Method: |  |
| Confidence: | 7.09691 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [229-305] |
1 11 21 31 41 51
| | | | | |
1 VVQEVTPVPE PPVTTNNATT NSTSNSTVIA SEPVTQEDTS QKPETRQEPA SADDHVSTGN 60
61 IDATGALSNE DTSSSGR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [306-419] |
1 11 21 31 41 51
| | | | | |
1 GGKDKTPMCL VNELARYNKI THQYRLTEER GPAHCKTFTV TLMLGDEEYS ADGFKIKKAQ 60
61 HLAASKAIEE TMYKHPPPKI RRSEEGGPMR THITPTVELN ALAMKLGQRT FYLL
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 1x49A |
| Description: | Solution structure of the first DSRM domain in Interferon-induced, double-stranded RNA-activated protein kinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.98844454241303 | bayes_pls_golite062009 |
| binding | 2.86619976447436 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.82435487029184 | bayes_pls_golite062009 |
| structural molecule activity | 2.66201477910663 | bayes_pls_golite062009 |
| tubulin binding | 2.64441327259575 | bayes_pls_golite062009 |
| microtubule binding | 2.56910114599273 | bayes_pls_golite062009 |
| protein binding | 2.48364477869915 | bayes_pls_golite062009 |
| RNA binding | 1.95224155318843 | bayes_pls_golite062009 |
| DNA binding | 1.49492945560218 | bayes_pls_golite062009 |
| transcription regulator activity | 1.22178500811874 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.967560318725736 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.935558208370217 | bayes_pls_golite062009 |
| transcription activator activity | 0.880231812214114 | bayes_pls_golite062009 |
| transcription factor activity | 0.31021399747574 | bayes_pls_golite062009 |
|
Region A: Residues: [420-482] |
1 11 21 31 41 51
| | | | | |
1 DPTQIPPTDS IVPPEFAGGH LLTAPGPGMP QPPPPPAYAL RQRLGNGFVP IPSQPMHPHF 60
61 FHG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [483-557] |
1 11 21 31 41 51
| | | | | |
1 PGQRPFPPKF PSRFALPPPL GAHVHHGPNG PFPSVPTPPS KITLFVGKQK FVGIGRTLQQ 60
61 AKHDAAARAL QVLKT
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [558-647] |
1 11 21 31 41 51
| | | | | |
1 QAISASEEAL EDSMDEGDKK SPISQVHEIG IKRNMTVHFK VLREEGPAHM KNFITACIVG 60
61 SIVTEGEGNG KKVSKKRAAE KMLVELQKLP
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 1ekzA |
| Description: | Staufen, domain III |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.98844454241303 | bayes_pls_golite062009 |
| binding | 2.86619976447436 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.82435487029184 | bayes_pls_golite062009 |
| structural molecule activity | 2.66201477910663 | bayes_pls_golite062009 |
| tubulin binding | 2.64441327259575 | bayes_pls_golite062009 |
| microtubule binding | 2.56910114599273 | bayes_pls_golite062009 |
| protein binding | 2.48364477869915 | bayes_pls_golite062009 |
| RNA binding | 1.95224155318843 | bayes_pls_golite062009 |
| DNA binding | 1.49492945560218 | bayes_pls_golite062009 |
| transcription regulator activity | 1.22178500811874 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.967560318725736 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.935558208370217 | bayes_pls_golite062009 |
| transcription activator activity | 0.880231812214114 | bayes_pls_golite062009 |
| transcription factor activity | 0.31021399747574 | bayes_pls_golite062009 |
|
Region A: Residues: [648-804] |
1 11 21 31 41 51
| | | | | |
1 PLTPTKQTPL KRIKVKTPGK SGAAAREGSV VSGTDGPTQT GKPERRKRLN PPKDKLIDMD 60
61 DADNPITKLI QLQQTRKEKE PIFELIAKNG NETARRREFV MEVSASGSTA RGTGNSKKLA 120
121 KRNAAQALFE LLEAVQVTPT NETQSSEECS TSATMSA
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1whnA |
| Description: | Solution structure of the dsRBD from hypothetical protein BAB26260 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.98844454241303 | bayes_pls_golite062009 |
| binding | 2.86619976447436 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.82435487029184 | bayes_pls_golite062009 |
| structural molecule activity | 2.66201477910663 | bayes_pls_golite062009 |
| tubulin binding | 2.64441327259575 | bayes_pls_golite062009 |
| microtubule binding | 2.56910114599273 | bayes_pls_golite062009 |
| protein binding | 2.48364477869915 | bayes_pls_golite062009 |
| RNA binding | 1.95224155318843 | bayes_pls_golite062009 |
| DNA binding | 1.49492945560218 | bayes_pls_golite062009 |
| transcription regulator activity | 1.22178500811874 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.967560318725736 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.935558208370217 | bayes_pls_golite062009 |
| transcription activator activity | 0.880231812214114 | bayes_pls_golite062009 |
| transcription factor activity | 0.31021399747574 | bayes_pls_golite062009 |
|
Region A: Residues: [805-1026] |
1 11 21 31 41 51
| | | | | |
1 VTAPAVEATA EGKVPMVATP VGPMPGILIL RQNKKPAKKR DQIVIVKSNV ESKEEEANKE 60
61 VAVAAEENSN NSANSGDSSN SSSGDSQATE AASESALNTS TGSNTSGVSS NSSNVGANTD 120
121 GNNHAESKNN TESSSNSTSN TQSAGVHMKE QLLYLSKLLD FEVNFSDYPK GNHNEFLTIV 180
181 TLSTHPPQIC HGVGKSSEES QNDAASNALK ILSKLGLNNA MK
|
| Detection Method: | |
| Confidence: | 3.24 |
| Match: | 1qu6A |
| Description: | dsRNA-dependent protein kinase pkr |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.80632915073735 | bayes_pls_golite062009 |
| binding | 2.73737762243378 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.69938614227852 | bayes_pls_golite062009 |
| tubulin binding | 2.59197201719144 | bayes_pls_golite062009 |
| structural molecule activity | 2.56149875079819 | bayes_pls_golite062009 |
| microtubule binding | 2.50694560502594 | bayes_pls_golite062009 |
| protein binding | 2.38844215549064 | bayes_pls_golite062009 |
| RNA binding | 1.63984513781471 | bayes_pls_golite062009 |
| DNA binding | 1.44777714653394 | bayes_pls_golite062009 |
| transcription regulator activity | 1.22603137650888 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.927228352447363 | bayes_pls_golite062009 |
| transcription activator activity | 0.834760842898207 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.402046758389082 | bayes_pls_golite062009 |
| transcription factor activity | 0.312418023287799 | bayes_pls_golite062009 |
| catalytic activity | 0.00430305721638241 | bayes_pls_golite062009 |
