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View Structure Prediction Details

Protein: CG4966-PB
Organism: Drosophila melanogaster
Length: 834 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4966-PB.

Description E-value Query
Range
Subject
Range
gi|21392074 - gi|21392074|gb|AAM48391.1| RE07883p [Drosophila melanogaster]
1328.0 [0..1] [834..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKETMIVF VYDTECLTDE ADDPISAVLY FHPSWVSDSQ KVALCGQLMG TSYFLKDCFF  60
   61 NPRILALQNG KFVLKEFGRF ILAIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDRNIGDQLL EHRADLLSSL LKFFHRDVQT LYAQYAAPPA LNRRNLSEKL YHIFETYLPM  60
   61 LQRNGNTFQN VPRLRMPKTA SHIFLEAIQT LQSCQQTKGI LGGAILYHNK VVASQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [201-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDMVTKHLV LTDPLHIRTA AEQVTNHPEF HIPNGVQMLV VYLEHMQYRQ LAGEAQRAQN  60
   61 LQMNTAQLTQ NGMPFQYAKR KIKRDKSLIF THIPEEEHAP EQQGAVEQLP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [311-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PARPKSMRPT HLPLRIKSMQ SKELPESGIA SINFDETDSY PQFIGRTSVC NTPMTENKVL  60
   61 PVANVMSICA NPEDEGKEED IHNSNGKTHS RRNSLKVDVE KFFQNFISNP NKQLTRRKSS 120
  121 ADLQDALRAI SKKLNNFTHG LKTDVNRNGS GNGDVSSDSP DFIEDDDKIT SRTISDPTYP 180
  181 VFNTNGQQIS RSLFQQFLDQ YRKLWGVASE QAHED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [526-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AELAALVAEF QEFNAEIQKL DEHMRQQAAE ASSADRNLNV SAAKTPLDKR SMTLPLKSAG  60
   61 ESTFGERASG RSGAGGVPLT PLMAKLSVLA LSETTPIEIQ TPLTTSKVFP RRSSLKCEDA 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [647-834]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALAALTTAP AQPPGPIQPD GLQRTELYIC GQQNMTLLLL MEEGTCQQQQ VVQKMFDICV  60
   61 AKFPHMESQL NQTLNVNVEG DNRDGSNYSF MCVDSKWDVL QRNGPWNPLE LNILESMHSI 120
  121 HSSGHHLTDL ILRSNDSVYY GHKNGRTEFF YKEPTHQING IPPPSDPIGN IQSRAKSRLE 180
  181 RDHSYMLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle