YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG4966-PB
Organism: Drosophila melanogaster
Length: 834 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4966-PB.

Description E-value Query
Range
Subject
Range
gi|21392074 - gi|21392074|gb|AAM48391.1| RE07883p [Drosophila melanogaster]
1328.0 [0..1] [834..1]

Back

Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKETMIVF VYDTECLTDE ADDPISAVLY FHPSWVSDSQ KVALCGQLMG TSYFLKDCFF  60
   61 NPRILALQNG KFVLKEFGRF ILAIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDRNIGDQLL EHRADLLSSL LKFFHRDVQT LYAQYAAPPA LNRRNLSEKL YHIFETYLPM  60
   61 LQRNGNTFQN VPRLRMPKTA SHIFLEAIQT LQSCQQTKGI LGGAILYHNK VVASQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [201-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDMVTKHLV LTDPLHIRTA AEQVTNHPEF HIPNGVQMLV VYLEHMQYRQ LAGEAQRAQN  60
   61 LQMNTAQLTQ NGMPFQYAKR KIKRDKSLIF THIPEEEHAP EQQGAVEQLP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [311-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PARPKSMRPT HLPLRIKSMQ SKELPESGIA SINFDETDSY PQFIGRTSVC NTPMTENKVL  60
   61 PVANVMSICA NPEDEGKEED IHNSNGKTHS RRNSLKVDVE KFFQNFISNP NKQLTRRKSS 120
  121 ADLQDALRAI SKKLNNFTHG LKTDVNRNGS GNGDVSSDSP DFIEDDDKIT SRTISDPTYP 180
  181 VFNTNGQQIS RSLFQQFLDQ YRKLWGVASE QAHED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [526-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AELAALVAEF QEFNAEIQKL DEHMRQQAAE ASSADRNLNV SAAKTPLDKR SMTLPLKSAG  60
   61 ESTFGERASG RSGAGGVPLT PLMAKLSVLA LSETTPIEIQ TPLTTSKVFP RRSSLKCEDA 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [647-834]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALAALTTAP AQPPGPIQPD GLQRTELYIC GQQNMTLLLL MEEGTCQQQQ VVQKMFDICV  60
   61 AKFPHMESQL NQTLNVNVEG DNRDGSNYSF MCVDSKWDVL QRNGPWNPLE LNILESMHSI 120
  121 HSSGHHLTDL ILRSNDSVYY GHKNGRTEFF YKEPTHQING IPPPSDPIGN IQSRAKSRLE 180
  181 RDHSYMLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle