| Protein: | tra2-PG, tra2-PA... |
| Organism: | Drosophila melanogaster |
| Length: | 264 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tra2-PG, tra2-PA....
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..1] | [181..1] |
|
Region A: Residues: [1-264] |
1 11 21 31 41 51
| | | | | |
1 MDREPLSSGR LHCSARYKHK RSASSSSAGT TSSGHKDRRS DYDYCGSRRH QRSSSRRRSR 60
61 SRSSSESPPP EPRHRSGRSS RDRERMHKSR EHPQASRCIG VFGLNTNTSQ HKVRELFNKY 120
121 GPIERIQMVI DAQTQRSRGF CFIYFEKLSD ARAAKDSCSG IEVDGRRIRV DFSITQRAHT 180
181 PTPGVYLGRQ PRGKAPRSFS PRRGRRVYHD RSASPYDNYR DRYDYRNDRY DRNLRRSPSR 240
241 NRYTRNRSYS RSRSPQLRRT SSRY
|
| Detection Method: |  |
| Confidence: | 42.69897 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| nucleic acid binding | 3.30499161454806 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| 0.84389121154917 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.40943492051131 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.361110886317161 | bayes_pls_golite062009 |
| DNA binding | 0.139895000724487 | bayes_pls_golite062009 |
