YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8407-PB, CG8407-PA
Organism:	Drosophila melanogaster
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8407-PB, CG8407-PA.

Description	E-value	Query Range	Subject Range
gi\|76642713 - gi\|76642713\|ref\|XP_593596.2\| PREDICTED: similar to dynein light chain-2 [Bos taurus]	174.0	[0..11]	[102..149]
gi\|50758408 - gi\|50758408\|ref\|XP_415908.1\| PREDICTED: similar to dynein light chain-2 [Gallus gallus]	174.0	[0..2]	[102..422]
gi\|112418924 - gi\|112418924\|gb\|AAI22095.1\| Dnl2 protein [Danio rerio]	155.0	[0..13]	[102..36]
gi\|47168753, gi\|... - gi\|47168753\|pdb\|1RE6\|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic...	153.0	[0..14]	[102..6]
gi\|72044059, gi\|... - gi\|72046933\|ref\|XP_785110.1\| PREDICTED: similar to dynein light chain-2 [Strongylocentrotus purpurat... DYL1_ANTCR - Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1 DYL1_HELCR - Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1	153.0	[0..14]	[102..1]
gi\|108872208, gi... - gi\|157129440\|ref\|XP_001655387.1\| cytoplasmic dynein light chain [Aedes aegypti], gi\|157129438\|ref\|XP...	152.0	[0..11]	[102..37]
gi\|73966558 - gi\|73966558\|ref\|XP_866843.1\| PREDICTED: similar to dynein light chain-2 isoform 2 [Canis familiaris]	151.0	[0..11]	[102..12]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEEAGKEG EKKIVHVYPL VKHTDMNEEM RIEAIELSIT ACEKYSSNYE HAAKIIKENM  60
   61 DKKFGIYWHV VVGEGFGFEV SYETENILYL FFAGNLAIVL WKCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.045757
Match:	1re6A
Description:	Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
microtubule motor activity	9.69298846835381	bayes_pls_golite062009
motor activity	5.85494716006373	bayes_pls_golite062009
dynein intermediate chain binding	4.03852951116965	bayes_pls_golite062009
dynein binding	3.71410250466707	bayes_pls_golite062009
cytoskeletal protein binding	2.12454941323509	bayes_pls_golite062009
hydrolase activity	1.24792079378947	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.11079367242942	bayes_pls_golite062009
pyrophosphatase activity	1.04428843743645	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.02647448963539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.02513511889901	bayes_pls_golite062009
binding	0.897995079094067	bayes_pls_golite062009
protein binding	0.788632403631307	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: