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View Structure Prediction Details

Protein: E(Pc)-PA, E(Pc)-PB
Organism: Drosophila melanogaster
Length: 2023 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for E(Pc)-PA, E(Pc)-PB.

Description E-value Query
Range
Subject
Range
gi|3757890, gi|7... - pir||T13154 polycomb protein enhancer - fruit fly (Drosophila melanogaster), gi|3757890|gb|AAC64271....
1725.0 [0..1] [2023..1]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSFRARH LDPSKQMPIY LAEELPDLPE YSAINRAVPQ MPSGMEKEEE SEHHLQRAIC  60
   61 TGLIIPTPEV LQTDQPFYDA YYPPDYKMPR QMIHMQPLGL DTEVPDYDMD SADEDWLSQQ 120
  121 QRLELTELKF EQMMDRLEKS SGQTVVTLNE AKSLLNQDDE TSISVYDYWL NKRLKMQHPL 180
  181 ILTVKTESRP GASSNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYLAFRRRTE KMQTRKNRKN DEASYEKMLK LRRDLQRATT ILEMVRRREE TKRDHLKMTV  60
   61 NIFEKRVEMR DFNGAVYSEL NSQYKNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPAYNPLYTN QYSQGAAAVG TAGAILAALP TGLLPGGAGA AGNANVFGSA SQYLNSSNLT  60
   61 MDAISGSGNG NSSRKEKRPY KKRKHKLPRD KQQHQQQQTQ QHQQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2d9eA
Description: No description for 2d9eA was found.

Predicted Domain #4
Region A:
Residues: [389-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYLPASGGAG VSPAHHLPHH LHHLSRQQSA SPAANDSIAD SEEEDYFGAG AQNGNKLGSE  60
   61 SEEETPFAFR RRSSCVYLPT RQRDGRYPWD SADEDMAPSG ACSDAKYRYT LTSLNYPRPR 120
  121 CIGFARRRLG RGGRILLDRA TTNFDDFWSQ LDYTVMESVT VNKCRDKIKQ RDPDQLCKPS 180
  181 SPPTVVDLVP AGKPVDGEHP VPELIKEEPS SDTEKPVAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [608-703]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESGRESKER ELEEKFENDV DDEFVASDDE NVSRLGIYSS AVTLPQSCAD LRQKRRRLRR  60
   61 KKQQLRELNA AKRLKRSSEA VATAEDVQLE DEDTKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [704-847]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLRPLPRAYL QRLALILGQK LKVEEDDNTE VSENVAPELL EMNDPEQLQP PRANHQQHHR  60
   61 SNHNNNNNTV LNNNNSSSSN VMNKDVSISE KINVIKQEAE ELVGGKCEDQ PVASTSAAAA 120
  121 AARAAEAAAA AEAASSTTTL AAPN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [848-1045]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGPSLEEVAK TIKREMIDAD DSNEPLSSIR TAAVMLSTQT SVSELMDDEA EDDVNLAQLS  60
   61 SIIRHTAVKK ELEAQQHQQQ VQHEQMQAAR KMEEDEAAPC LNQLPDVIRL RNIRNSQVHA 120
  121 RPKDLFVQAP VDEEFNADYM GGLSPTSSQR LDICNELLSE IRRDWLHFRP KTPTDELSDS 180
  181 QDCEVGKTCD SHAVDWTQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1046-1194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTPISVELNR LGKREAEESD SSSYFLSSGF KYRDLESDAQ LLQTVQAQDY ARGSSKSPNC  60
   61 SGSGSGSALE FNLSGGDSLN DINNLLGCDD EDDNHEHMLD NILQECAMDD PKALNQATNF 120
  121 WNGILDGEAA VDEVEMADQL LDCIDEKKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1195-1392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGAADTSKR AGRNRKARLI QAPVGSSAFT VCPTAETLKE RELFFSQAPP VEVPPKEKTP  60
   61 AEVELPEVVV KETANLPVKV EAVEKPQSEV LPVAPQPQQL QPQAITLPTT QLINIPAQIS 120
  121 TQKQHQQPQV TQLLNQFANA GPQIIARTEY GGGAAVGDIV TITPHTGSSP LPTLTAQQQL 180
  181 QHQLAQAQLR NVTVQQRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #10
Region A:
Residues: [1393-1440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPQNPNQNQ NPQQQLLFQM QRDPSRSLTP LQAAGAGATG NHLIYTTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1441-1668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGEIVTAGAA ASASQKVTYA IQKAGVSSGG ATTASIGPNT VITLSNVKVQ NDDISSGGSG  60
   61 NSGSSVNIIN TASGQQLAVH SIAGMQQQGQ QQVQQVTTST PLLVATPTRN NVQQQQQQLV 120
  121 QQQPIVWRQV SGTNTAVATT AVLSTTVDSS PKAVTNQILW TSRATQKRQL NGPENTDINK 180
  181 LLLNRKLPRK QQIQQQHQQI QLTKQQLQQL VQHEELDDLV ATSTGNSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #12
Region A:
Residues: [1669-1811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQMETGDGLQ QQQQQQQQQQ QLQKLSKVIK MSQFPLLVSD VSLQQQQSVS GQAQQQQLKP  60
   61 NSAAAIAANH NYSLHPASTA IITAQATPQQ ANKIFLTSSN SGGGGSAGNF TIATASELQA 120
  121 AAAGQKLHYK ELPNSNLKLN FVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #13
Region A:
Residues: [1812-2023]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGTGEQTQQ VGATTVLLNK SQQQQQQQQH QKLKTLATTG NSQTGQGDKR VLYTSLLNVK  60
   61 PLQKNNSGQM QMQLGPGGLQ QVLRGRLNNS AIITRTLPLG TTVNSTGGAV GPTTTTIRQL 120
  121 VTTNANNVSS QDGNLLSAKE VGKALTVEQV IASANNGGVV LPTSNNNNNN NGSGAGGNGG 180
  181 PLNSGVNATG AGGGGSTGAG VGGAGVTSTI NR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle