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View Structure Prediction Details

Protein: E(Pc)-PA, E(Pc)-PB
Organism: Drosophila melanogaster
Length: 2023 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for E(Pc)-PA, E(Pc)-PB.

Description E-value Query
Range
Subject
Range
gi|3757890, gi|7... - pir||T13154 polycomb protein enhancer - fruit fly (Drosophila melanogaster), gi|3757890|gb|AAC64271....
1725.0 [0..1] [2023..1]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSFRARH LDPSKQMPIY LAEELPDLPE YSAINRAVPQ MPSGMEKEEE SEHHLQRAIC  60
   61 TGLIIPTPEV LQTDQPFYDA YYPPDYKMPR QMIHMQPLGL DTEVPDYDMD SADEDWLSQQ 120
  121 QRLELTELKF EQMMDRLEKS SGQTVVTLNE AKSLLNQDDE TSISVYDYWL NKRLKMQHPL 180
  181 ILTVKTESRP GASSNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYLAFRRRTE KMQTRKNRKN DEASYEKMLK LRRDLQRATT ILEMVRRREE TKRDHLKMTV  60
   61 NIFEKRVEMR DFNGAVYSEL NSQYKNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPAYNPLYTN QYSQGAAAVG TAGAILAALP TGLLPGGAGA AGNANVFGSA SQYLNSSNLT  60
   61 MDAISGSGNG NSSRKEKRPY KKRKHKLPRD KQQHQQQQTQ QHQQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2d9eA
Description: No description for 2d9eA was found.

Predicted Domain #4
Region A:
Residues: [389-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYLPASGGAG VSPAHHLPHH LHHLSRQQSA SPAANDSIAD SEEEDYFGAG AQNGNKLGSE  60
   61 SEEETPFAFR RRSSCVYLPT RQRDGRYPWD SADEDMAPSG ACSDAKYRYT LTSLNYPRPR 120
  121 CIGFARRRLG RGGRILLDRA TTNFDDFWSQ LDYTVMESVT VNKCRDKIKQ RDPDQLCKPS 180
  181 SPPTVVDLVP AGKPVDGEHP VPELIKEEPS SDTEKPVAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [608-703]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESGRESKER ELEEKFENDV DDEFVASDDE NVSRLGIYSS AVTLPQSCAD LRQKRRRLRR  60
   61 KKQQLRELNA AKRLKRSSEA VATAEDVQLE DEDTKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [704-847]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLRPLPRAYL QRLALILGQK LKVEEDDNTE VSENVAPELL EMNDPEQLQP PRANHQQHHR  60
   61 SNHNNNNNTV LNNNNSSSSN VMNKDVSISE KINVIKQEAE ELVGGKCEDQ PVASTSAAAA 120
  121 AARAAEAAAA AEAASSTTTL AAPN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [848-1045]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGPSLEEVAK TIKREMIDAD DSNEPLSSIR TAAVMLSTQT SVSELMDDEA EDDVNLAQLS  60
   61 SIIRHTAVKK ELEAQQHQQQ VQHEQMQAAR KMEEDEAAPC LNQLPDVIRL RNIRNSQVHA 120
  121 RPKDLFVQAP VDEEFNADYM GGLSPTSSQR LDICNELLSE IRRDWLHFRP KTPTDELSDS 180
  181 QDCEVGKTCD SHAVDWTQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1046-1194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTPISVELNR LGKREAEESD SSSYFLSSGF KYRDLESDAQ LLQTVQAQDY ARGSSKSPNC  60
   61 SGSGSGSALE FNLSGGDSLN DINNLLGCDD EDDNHEHMLD NILQECAMDD PKALNQATNF 120
  121 WNGILDGEAA VDEVEMADQL LDCIDEKKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1195-1392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGAADTSKR AGRNRKARLI QAPVGSSAFT VCPTAETLKE RELFFSQAPP VEVPPKEKTP  60
   61 AEVELPEVVV KETANLPVKV EAVEKPQSEV LPVAPQPQQL QPQAITLPTT QLINIPAQIS 120
  121 TQKQHQQPQV TQLLNQFANA GPQIIARTEY GGGAAVGDIV TITPHTGSSP LPTLTAQQQL 180
  181 QHQLAQAQLR NVTVQQRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #10
Region A:
Residues: [1393-1440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPQNPNQNQ NPQQQLLFQM QRDPSRSLTP LQAAGAGATG NHLIYTTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1441-1668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGEIVTAGAA ASASQKVTYA IQKAGVSSGG ATTASIGPNT VITLSNVKVQ NDDISSGGSG  60
   61 NSGSSVNIIN TASGQQLAVH SIAGMQQQGQ QQVQQVTTST PLLVATPTRN NVQQQQQQLV 120
  121 QQQPIVWRQV SGTNTAVATT AVLSTTVDSS PKAVTNQILW TSRATQKRQL NGPENTDINK 180
  181 LLLNRKLPRK QQIQQQHQQI QLTKQQLQQL VQHEELDDLV ATSTGNSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #12
Region A:
Residues: [1669-1811]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQMETGDGLQ QQQQQQQQQQ QLQKLSKVIK MSQFPLLVSD VSLQQQQSVS GQAQQQQLKP  60
   61 NSAAAIAANH NYSLHPASTA IITAQATPQQ ANKIFLTSSN SGGGGSAGNF TIATASELQA 120
  121 AAAGQKLHYK ELPNSNLKLN FVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #13
Region A:
Residues: [1812-2023]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGTGEQTQQ VGATTVLLNK SQQQQQQQQH QKLKTLATTG NSQTGQGDKR VLYTSLLNVK  60
   61 PLQKNNSGQM QMQLGPGGLQ QVLRGRLNNS AIITRTLPLG TTVNSTGGAV GPTTTTIRQL 120
  121 VTTNANNVSS QDGNLLSAKE VGKALTVEQV IASANNGGVV LPTSNNNNNN NGSGAGGNGG 180
  181 PLNSGVNATG AGGGGSTGAG VGGAGVTSTI NR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle