| Protein: | Myd88-PA, FBpp03... |
| Organism: | Drosophila melanogaster |
| Length: | 537 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Myd88-PA, FBpp03....
| Description | E-value | Query Range |
Subject Range |
|
|
277.0 | [0..42] | [537..24] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MRPRFVCHQQ HSVAHSHYQP HSHFHHHTHR HPNPPHHHHI YGATDVSYRR YRTAGMVVAE 60
61 GVMDSGSGSG TGTGLGHFNE TPLSALGIET RTQLSRMLNR KKVLRSEEGY QRDWRGISEL 120
121 AKQKGFVDEN ANNPMDLVLI SWSQRSPQTA KVGHLEHFLG IIDRWDVCDD IQENLAKDTQ 180
181 RFIMKQEQRQ TALVEAC
|
| Detection Method: |  |
| Confidence: | 6.30103 |
| Match: | 2o6rA |
| Description: | No description for 2o6rA was found. |
|
Region A: Residues: [198-383] |
1 11 21 31 41 51
| | | | | |
1 PPPPSDCFET NNNYSSSNNI TVGQSVQILS DEDQRCVQMG QPLPRYNACV LYAEADIDHA 60
61 TEIMNNLESE RYNLRLFLRH RDMLMGVPFE HVQLSHFMAT RCNHLIVVLT EEFLRSPENT 120
121 YLVNFTQKIQ IENHTRKIIP ILYKTDMHIP QTLGIYTHIK YAGDSKLFNF WDKLARSLHD 180
181 LDAFSI
|
| Detection Method: | |
| Confidence: | 32.154902 |
| Match: | 1fywA |
| Description: | Toll-like receptor 2, TLR2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded RNA binding | 4.32086914489227 | bayes_pls_golite062009 |
| siRNA binding | 3.8837709376582 | bayes_pls_golite062009 |
| nucleic acid binding | 2.46815521682665 | bayes_pls_golite062009 |
| binding | 2.31499720771829 | bayes_pls_golite062009 |
| protein binding | 2.10005190551596 | bayes_pls_golite062009 |
| receptor activity | 1.91178122133017 | bayes_pls_golite062009 |
| 1.86047705807897 | bayes_pls_golite062009 | |
| lipopolysaccharide binding | 1.79927076993237 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.68133457503491 | bayes_pls_golite062009 |
| DNA binding | 1.10666978727222 | bayes_pls_golite062009 |
| RNA binding | 0.964496567264848 | bayes_pls_golite062009 |
| signal transducer activity | 0.574489626172021 | bayes_pls_golite062009 |
| molecular transducer activity | 0.574489626172021 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.0787292540642052 | bayes_pls_golite062009 |
| growth factor activity | 0.0066769104515047 | bayes_pls_golite062009 |
|
Region A: Residues: [384-537] |
1 11 21 31 41 51
| | | | | |
1 YSTRQVQTPS PVEESAPRVT TPSIRIQIND KDVTDMPNYN SCKVPEAETT IVSVSGDTGS 60
61 PLPEHKPKKK DRFLRRITHS FGKTARSDGA SGKTLRHAHS VSTINVTERE RTLSASSSNI 120
121 STTSESKKSF IKWQPNILKK ALFSRSSSKL QTPG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
