| Protein: | nito-PA, FBpp030... |
| Organism: | Drosophila melanogaster |
| Length: | 793 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nito-PA, FBpp030....
| Description | E-value | Query Range |
Subject Range |
|
|
399.0 | [0..1] | [793..1] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MSSHRDGAGA DRITIKIHNM KRSASRSPGP ASRSSLSRNS RSMGRGYDNG SGVPGDSPER 60
61 LSPERMRRRL DRSPSRYGSP HREPYMRGPP PAERP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [96-196] |
1 11 21 31 41 51
| | | | | |
1 AGYKVLCVSA LPPKAPDDFI EETLYREYKK FGDFSVRLAH DLDERVAYVC FRTPEDAREA 60
61 KHHKPRLIIY DKMAIVEPVY KSTTRPEYRP RGHSMSPPDY E
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1whyA |
| Description: | Solution structure of the RNA recognition motif from hypothetical RNA binding protein BC052180 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [197-291] |
1 11 21 31 41 51
| | | | | |
1 RYHYSRSPMG QGVPLDHRRP PIDPYDRYGP PHMHPHAVHP RDYRPLHHDY PHPPRGPPLH 60
61 RGGHPHHLHG HAPPHQYAPM RPLAPRPHAP YEKPE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [292-457] |
1 11 21 31 41 51
| | | | | |
1 SKKDKFPNYL HHVQPEDDPL STRTLFAGNL EVTIADDELR RIFGKYGVVD DIDIKRPPPG 60
61 TGNAFAFVRY QNLDMAHRAK IELSGQYIGK FQCKIGYGKV TPATRMWIGG LGAWTSVTQL 120
121 EREFDRFGAI KKIEYQKGEP YAYIQYETVE AATAAVKEMR GFPLGG
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 2cjkA |
| Description: | No description for 2cjkA was found. |
|
Region A: Residues: [458-609] |
1 11 21 31 41 51
| | | | | |
1 PERRLRTDFA ELPGATPAAP FKSSKPPYDE SALEYRRPEY DPYYEESAAY APRGGYSPYP 60
61 PRGGYRGRGG YRGRGRGMYH YHNDVHRPPH PGSLAGSSSS VPPPGGVEDE WRRPPGESYD 120
121 RGARSSSREP GVERSRSRSP LKRARSPGSD SD
|
| Detection Method: | |
| Confidence: | 3.154902 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [610-793] |
1 11 21 31 41 51
| | | | | |
1 TSTRRNDALA SASTVPDVAR KCSTVWTGAL ILKSSLFPAK FHLTDGDTDI VESLMRDEEG 60
61 KHNLRITQRL RLDPPKLDDV QKRIASSSSH AIFMGLAGST NDTNCDDASV QTRPLRNLVS 120
121 YLKQKEAAGV ISLLNKETEA TGVLYAFPPC DFSTELLKRT CHSLTEEGLK EDHLVIVVVR 180
181 GGTA
|
| Detection Method: | |
| Confidence: | 57.69897 |
| Match: | 1ow1A |
| Description: | Crystal structure of the SPOC domain of the human transcriptional corepressor, SHARP. |
Matching Structure (courtesy of the PDB): |
|
