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View Structure Prediction Details

Protein: nito-PA, FBpp030...
Organism: Drosophila melanogaster
Length: 793 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nito-PA, FBpp030....

Description E-value Query
Range
Subject
Range
gi|54635823, gi|... - gi|54635823|gb|EAL25226.1| GA15511-PA [Drosophila pseudoobscura], gi|125808149|ref|XP_001360651.1| G...
399.0 [0..1] [793..1]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHRDGAGA DRITIKIHNM KRSASRSPGP ASRSSLSRNS RSMGRGYDNG SGVPGDSPER  60
   61 LSPERMRRRL DRSPSRYGSP HREPYMRGPP PAERP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGYKVLCVSA LPPKAPDDFI EETLYREYKK FGDFSVRLAH DLDERVAYVC FRTPEDAREA  60
   61 KHHKPRLIIY DKMAIVEPVY KSTTRPEYRP RGHSMSPPDY E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 1whyA
Description: Solution structure of the RNA recognition motif from hypothetical RNA binding protein BC052180
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [197-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYHYSRSPMG QGVPLDHRRP PIDPYDRYGP PHMHPHAVHP RDYRPLHHDY PHPPRGPPLH  60
   61 RGGHPHHLHG HAPPHQYAPM RPLAPRPHAP YEKPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [292-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKKDKFPNYL HHVQPEDDPL STRTLFAGNL EVTIADDELR RIFGKYGVVD DIDIKRPPPG  60
   61 TGNAFAFVRY QNLDMAHRAK IELSGQYIGK FQCKIGYGKV TPATRMWIGG LGAWTSVTQL 120
  121 EREFDRFGAI KKIEYQKGEP YAYIQYETVE AATAAVKEMR GFPLGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2cjkA
Description: No description for 2cjkA was found.

Predicted Domain #5
Region A:
Residues: [458-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PERRLRTDFA ELPGATPAAP FKSSKPPYDE SALEYRRPEY DPYYEESAAY APRGGYSPYP  60
   61 PRGGYRGRGG YRGRGRGMYH YHNDVHRPPH PGSLAGSSSS VPPPGGVEDE WRRPPGESYD 120
  121 RGARSSSREP GVERSRSRSP LKRARSPGSD SD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #6
Region A:
Residues: [610-793]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTRRNDALA SASTVPDVAR KCSTVWTGAL ILKSSLFPAK FHLTDGDTDI VESLMRDEEG  60
   61 KHNLRITQRL RLDPPKLDDV QKRIASSSSH AIFMGLAGST NDTNCDDASV QTRPLRNLVS 120
  121 YLKQKEAAGV ISLLNKETEA TGVLYAFPPC DFSTELLKRT CHSLTEEGLK EDHLVIVVVR 180
  181 GGTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 1ow1A
Description: Crystal structure of the SPOC domain of the human transcriptional corepressor, SHARP.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle