Protein: | nito-PA, FBpp030... |
Organism: | Drosophila melanogaster |
Length: | 793 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nito-PA, FBpp030....
Description | E-value | Query Range |
Subject Range |
|
399.0 | [0..1] | [793..1] |
Region A: Residues: [1-95] |
1 11 21 31 41 51 | | | | | | 1 MSSHRDGAGA DRITIKIHNM KRSASRSPGP ASRSSLSRNS RSMGRGYDNG SGVPGDSPER 60 61 LSPERMRRRL DRSPSRYGSP HREPYMRGPP PAERP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [96-196] |
1 11 21 31 41 51 | | | | | | 1 AGYKVLCVSA LPPKAPDDFI EETLYREYKK FGDFSVRLAH DLDERVAYVC FRTPEDAREA 60 61 KHHKPRLIIY DKMAIVEPVY KSTTRPEYRP RGHSMSPPDY E |
Detection Method: | |
Confidence: | 7.522879 |
Match: | 1whyA |
Description: | Solution structure of the RNA recognition motif from hypothetical RNA binding protein BC052180 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 0.950788308762215 | bayes_pls_golite062009 |
nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
Region A: Residues: [197-291] |
1 11 21 31 41 51 | | | | | | 1 RYHYSRSPMG QGVPLDHRRP PIDPYDRYGP PHMHPHAVHP RDYRPLHHDY PHPPRGPPLH 60 61 RGGHPHHLHG HAPPHQYAPM RPLAPRPHAP YEKPE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [292-457] |
1 11 21 31 41 51 | | | | | | 1 SKKDKFPNYL HHVQPEDDPL STRTLFAGNL EVTIADDELR RIFGKYGVVD DIDIKRPPPG 60 61 TGNAFAFVRY QNLDMAHRAK IELSGQYIGK FQCKIGYGKV TPATRMWIGG LGAWTSVTQL 120 121 EREFDRFGAI KKIEYQKGEP YAYIQYETVE AATAAVKEMR GFPLGG |
Detection Method: | |
Confidence: | 28.0 |
Match: | 2cjkA |
Description: | No description for 2cjkA was found. |
Region A: Residues: [458-609] |
1 11 21 31 41 51 | | | | | | 1 PERRLRTDFA ELPGATPAAP FKSSKPPYDE SALEYRRPEY DPYYEESAAY APRGGYSPYP 60 61 PRGGYRGRGG YRGRGRGMYH YHNDVHRPPH PGSLAGSSSS VPPPGGVEDE WRRPPGESYD 120 121 RGARSSSREP GVERSRSRSP LKRARSPGSD SD |
Detection Method: | |
Confidence: | 3.154902 |
Match: | 1y0fB |
Description: | No description for 1y0fB was found. |
Region A: Residues: [610-793] |
1 11 21 31 41 51 | | | | | | 1 TSTRRNDALA SASTVPDVAR KCSTVWTGAL ILKSSLFPAK FHLTDGDTDI VESLMRDEEG 60 61 KHNLRITQRL RLDPPKLDDV QKRIASSSSH AIFMGLAGST NDTNCDDASV QTRPLRNLVS 120 121 YLKQKEAAGV ISLLNKETEA TGVLYAFPPC DFSTELLKRT CHSLTEEGLK EDHLVIVVVR 180 181 GGTA |
Detection Method: | |
Confidence: | 57.69897 |
Match: | 1ow1A |
Description: | Crystal structure of the SPOC domain of the human transcriptional corepressor, SHARP. |
Matching Structure (courtesy of the PDB): |