| Protein: | pk-PC |
| Organism: | Drosophila melanogaster |
| Length: | 1299 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pk-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
756.0 | [0..346] | [1140..343] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MSSLSTGGGA GGSSGGPGGA DAAAAPAAGQ ATVTATGNME PAMVPRTANL LACKQWWRVC 60
61 FLYGDQQKYY RQLYSKAAAQ RLADANQEPD NARDREYDTV DCDLIAGQLD AVEDADDGID 120
121 LGDHSSTPKG GATTAGRPLF PHSSSPRRSK KLLRSLRAHV RGEKLPKNDT TTANESSEVT 180
181 QRNARVTVLD DPFLFGIDAD HLGDLVVRGK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [211-400] |
1 11 21 31 41 51
| | | | | |
1 RYSTLDATEN MARFYAEQEA TAQVLEIIEQ EEESPEQEAP KPALPPKQKQ QRPVPPLPPP 60
61 PANRVTQDQG TQPAAPQVPL QPLTAGDLQF LNLSLRQRSL PRSMKPFKDA HDISFTFNEL 120
121 DTSAEPEVAT GAAQQESNEP ISRTPLTQIS YLQKIPTLPR HFSPSGQGLA TPPALGSGGM 180
181 GLPSSSSASA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [401-480] |
1 11 21 31 41 51
| | | | | |
1 LYAAQAAAGI LPTSPLPLQR HQQYLPPHHQ QHPGAGMGPG PGSGAAAGPP LGPQYSPGCS 60
61 ANPKYSNAQL PPPPHHHHQL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [481-558] |
1 11 21 31 41 51
| | | | | |
1 SPALSTPSPP SLLHHPAGGT SSASAHAPFL GGPHMDMQRQ SHSDDDSGCA LEEYTWVPPG 60
61 LRPDQVRLYF SQIPDDKV
|
| Detection Method: | |
| Confidence: | 20.30103 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.26906680202757 | bayes_pls_golite062009 |
| nucleic acid binding | 1.5361877165154 | bayes_pls_golite062009 |
| DNA binding | 1.50805568602414 | bayes_pls_golite062009 |
| protein binding | 0.905022998164426 | bayes_pls_golite062009 |
| transcription factor activity | 0.594688838246446 | bayes_pls_golite062009 |
| signal transducer activity | 0.0590340677124848 | bayes_pls_golite062009 |
| molecular transducer activity | 0.0590340677124848 | bayes_pls_golite062009 |
|
Region A: Residues: [559-746] |
1 11 21 31 41 51
| | | | | |
1 PYVNSPGEQY RVRQLLHQLP PHDNEVRYCH SLTDEERKEL RLFSTQRKRD ALGRGNVRQL 60
61 MSARPCDGCD DLISTGDIAV FATRLGPNAS WHPACFACSV CRELLVDLIY FHRDGRMYCG 120
121 RHHAETLKPR CSACDEIILA DECTEAEGRA WHMNHFACHE CDKQLGGQRY IMREGKPYCL 180
181 HCFDAMFA
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [747-826] |
1 11 21 31 41 51
| | | | | |
1 EYCDYCGEAI GVDQGQMSHD GQHWHATDEC FSCNTCRCSL LGRAFLPRRG AIYCSIACSK 60
61 GEPPTPSDSS GTGMYTTPTP
|
| Detection Method: | |
| Confidence: | 2.7 |
| Match: | 2cupA |
| Description: | Solution structure of the Skeletal muscle LIM-protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.0300494058962 | bayes_pls_golite062009 |
| protein binding | 1.20339329058617 | bayes_pls_golite062009 |
| receptor activity | 1.00000843633623 | bayes_pls_golite062009 |
| transporter activity | 0.893102092384062 | bayes_pls_golite062009 |
| signal transducer activity | 0.73994900849782 | bayes_pls_golite062009 |
| molecular transducer activity | 0.73994900849782 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.7072042577999 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.489535882040485 | bayes_pls_golite062009 |
| DNA binding | 0.397111874492592 | bayes_pls_golite062009 |
| nucleic acid binding | 0.297808510495986 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.256518766904171 | bayes_pls_golite062009 |
|
Region A: Residues: [827-975] |
1 11 21 31 41 51
| | | | | |
1 PTQRVRPHPQ APLPARIPSS HASSSPPMSP QQQQQHQATF NQAMYQMQSQ QMEAAGGLVD 60
61 QSKSYAASDS DAGVVKDLEH GGHMGGGDLT DFSGGRASST SQNLSPLNSP GDFQPHFLPK 120
121 PMELQRDGVY NFNEMSSNLD AAWSAKPTN
|
| Detection Method: | |
| Confidence: | 18.154902 |
| Match: | 1ubdC |
| Description: | Ying-yang 1 (yy1, zinc finger domain) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [976-1087] |
1 11 21 31 41 51
| | | | | |
1 SYHLQRQLLE NPHTASMPEL AGKLVAPPAH MQHLSQLHAV SSHQFQQHEY ADILHPPPPP 60
61 PGEIPELPTP NLSVASTALP PELMGSPTHS AGDRSLNTPM STQSASHAPP HP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1088-1299] |
1 11 21 31 41 51
| | | | | |
1 VSILSGASSS SPMSGEPAKK KGVRFEGIPD TLPRSRSYSG NGAGTSGGGE RERDRDKDKE 60
61 GGGRHGHGHS SRRRRRRKSS SSSSHHRSGS GHRSHSTTRA DTYAPAQPLS SSYQGPPSVL 120
121 QAANLVHESP SRQQRERERE REREESEESD VCSTCSSSSS SSEDYMMMYQ LPQRRHYGGV 180
181 RVSYVPNDAL AYDRKRKPSE LGGDKDKNCI IS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
