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View Structure Prediction Details

Protein: CG11163-PA, CG11...
Organism: Drosophila melanogaster
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11163-PA, CG11....

Description E-value Query
Range		 Subject
Range
gi|59275991 - gi|59275991|dbj|BAD89563.1| NTMTP1B [Nicotiana tabacum]
 270.0 [0..107] [496..24]

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Predicted Domain #1
Region A:
Residues: [1-120] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKYQKLDNT LLPNAHDDDS EGGFPGYFDD NHQSLGIQQD PDTRDDRLSD YQDRYYSVNN  60
   61 NSVNREVVTI GSNVVRVPEE QTWEVPLLGD CGDSARNQSS ETEFDMQREC CNHQPGFRAN 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-228] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSKSAQEAK YKIMLAVALC CVFMIIEFLG GYVAGSLAIM TDAAHLASDC ISFVIGLVAI  60
   61 WIGGRPPDER MSFGYKRFEV IGALASILGI WFVTTLLVVV AIERIFSQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.53
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 6.20443686476571 bayes_pls_golite062009
ion transmembrane transporter activity 6.11479851651253 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.71521511150856 bayes_pls_golite062009
transporter activity 3.98293753989079 bayes_pls_golite062009
transmembrane transporter activity 3.88313530012213 bayes_pls_golite062009
substrate-specific transporter activity 3.86867537460555 bayes_pls_golite062009
cadmium ion transmembrane transporter activity 3.15489440737786 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.61862894000527 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.19121021485065 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.14914871177232 bayes_pls_golite062009
cation channel activity 1.78793567733454 bayes_pls_golite062009
efflux transmembrane transporter activity 1.41612086977895 bayes_pls_golite062009
binding 1.28505954375411 bayes_pls_golite062009
ion channel activity 1.24140857317889 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.20401058605752 bayes_pls_golite062009
passive transmembrane transporter activity 1.19443885425411 bayes_pls_golite062009
channel activity 1.19443885425411 bayes_pls_golite062009
substrate-specific channel activity 1.19404477926718 bayes_pls_golite062009
active transmembrane transporter activity 0.475232131680683 bayes_pls_golite062009
protein binding 0.318355149027855 bayes_pls_golite062009
iron ion transmembrane transporter activity 0.186398867523746 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [229-498] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFELNADMMM LISGIGIVIN IVMMFVLHGS WFVNGNGHGH SHSHSHSHSH SHGNGHEPND  60
   61 SLSQTRSNSN FLTTIGSQSA STADEEDSIR KEINSNEHKI VITNGKKPTL TGTSNMELAH 120
  121 EDKNLNLRAA MIHVIGDLVQ SIGVFLAAVL IKVCPGAKYA DPLCTLIFSI IVIMTTLRLF 180
  181 RESLGIIVNA VPQNLNMRTL HLELGSIEGV RSLHHLNVWQ QTSQQRVLMV HLVTDSRADG 240
  241 NEVLQAATAL VSSPRYNIKH STIQLEPTTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 6.60087208506814 bayes_pls_golite062009
ion transmembrane transporter activity 6.49419690808578 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 6.066906606566 bayes_pls_golite062009
transporter activity 4.27173462293249 bayes_pls_golite062009
substrate-specific transporter activity 4.19993137135137 bayes_pls_golite062009
transmembrane transporter activity 4.18558383943492 bayes_pls_golite062009
cadmium ion transmembrane transporter activity 3.5658659940326 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.68106285271045 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.32644140472297 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.19343183150052 bayes_pls_golite062009
efflux transmembrane transporter activity 2.11491587250012 bayes_pls_golite062009
cation channel activity 1.89531256510168 bayes_pls_golite062009
ion channel activity 1.33777369753101 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 1.31663166812163 bayes_pls_golite062009
substrate-specific channel activity 1.28221434614717 bayes_pls_golite062009
passive transmembrane transporter activity 1.27960450391272 bayes_pls_golite062009
channel activity 1.27960450391272 bayes_pls_golite062009
binding 1.27456652114636 bayes_pls_golite062009
active transmembrane transporter activity 0.490905558612378 bayes_pls_golite062009
iron ion transmembrane transporter activity 0.376948884172728 bayes_pls_golite062009
protein binding 0.311357063667067 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle