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View Structure Prediction Details

Protein: FBpp0306796, Ski6-PA
Organism: Drosophila melanogaster
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0306796, Ski6-PA.

Description E-value Query
Range		 Subject
Range
PNP_CARHZ - Polyribonucleotide nucleotidyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...
 264.0 [0..6] [241..318]
PNP_SYMTH - Polyribonucleotide nucleotidyltransferase OS=Symbiobacterium thermophilum GN=pnp PE=3 SV=1
PNP_SYMTH - Polyribonucleotide nucleotidyltransferase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=...
 258.0 [0..8] [241..323]
PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus GN=pnp PE=3 SV=1
PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=pnp PE=3 SV...
 257.0 [0..6] [241..308]
PNP_CALS4 - Polyribonucleotide nucleotidyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...
PNP_THETN - Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter tengcongensis GN=pnp PE=3 SV=1
 256.0 [0..6] [241..305]
PNP_EXIS2 - Polyribonucleotide nucleotidyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490...
 256.0 [0..6] [241..309]
PNP_RALSO - Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum GN=pnp PE=3 SV=1
PNP_RALSO - Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum (strain GMI1000) GN=pnp PE=3 SV=...
 255.0 [0..7] [241..308]
PNP_BACLD - Polyribonucleotide nucleotidyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...
 255.0 [0..6] [241..308]
PNP_HALOH - Polyribonucleotide nucleotidyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 95...
 255.0 [0..1] [241..307]
gi|159121086, gi... - gi|94494198|ref|ZP_01301401.1| hypothetical protein Rgryl_01000730 [Rickettsiella grylli], gi|160872...
 254.0 [0..7] [241..318]
gi|89350148, gi|... - gi|89361251|ref|ZP_01199067.1| RNA binding S1:KH [Xanthobacter autotrophicus Py2], gi|89350148|gb|EA...
 254.0 [0..8] [245..365]

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Predicted Domain #1
Region A:
Residues: [1-246] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKYDLLSE QGLRLDGRRP HELRRIKCKL GVFEQPDGSA YMEQGNTKVL AAVYGPHQAK  60
   61 GNQTESVINC QYSQATFSTA ERKNRPRGDR KSLEFKLYLQ QALSAAIKSE LYPRSQIDIY 120
  121 VEVLQDDGAN YAVALNAATL ALIDAGICLN EFIVACTASL SKSNIPLTDI SQFEEVSGGP 180
  181 KLTVAALPTA EKIAFLEMSE RFHIDHLETV IETAMAGCRE IRDILEAAVK EHLLHMGSAS 240
  241 DFAKVG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.522879
Match: 2nn6B
Description: No description for 2nn6B was found.

Predicted functions:

Term Confidence Notes
exoribonuclease activity 7.55877202113513 bayes_pls_golite062009
ribonuclease activity 7.54644729272203 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 7.5310318714913 bayes_pls_golite062009
3'-5'-exoribonuclease activity 6.46930372693262 bayes_pls_golite062009
3'-5' exonuclease activity 4.29895100594643 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 3.83939403332553 bayes_pls_golite062009
exonuclease activity 3.40686901061667 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.86434572018929 bayes_pls_golite062009
RNA binding 2.05527376734941 bayes_pls_golite062009
structural constituent of ribosome 1.90115575554186 bayes_pls_golite062009
structural molecule activity 1.69321127364043 bayes_pls_golite062009
hydrolase activity 1.55476709794855 bayes_pls_golite062009
binding 1.3018457178158 bayes_pls_golite062009
transcription regulator activity 1.20748032530392 bayes_pls_golite062009
mRNA binding 1.17402119891853 bayes_pls_golite062009
nucleic acid binding 1.05662964529454 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
DNA binding 0.828609700556836 bayes_pls_golite062009
nuclease activity 0.69721312877891 bayes_pls_golite062009
carbohydrate kinase activity 0.51810239718467 bayes_pls_golite062009
tRNA-specific ribonuclease activity 0.383567539949931 bayes_pls_golite062009
ATP-dependent peptidase activity 0.1173709890655 bayes_pls_golite062009
protein binding 0.0913090112555771 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.0287026367466632 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle