| Protein: | gi|27665448, gi|... |
| Organism: | Rattus norvegicus |
| Length: | 191 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27665448, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
201.0 | [0..1] | [181..270] |
|
|
179.0 | [0..26] | [180..191] |
|
|
174.0 | [0..1] | [191..1] |
|
|
174.0 | [0..1] | [191..1] |
|
|
173.0 | [0..26] | [180..591] |
|
|
172.0 | [0..1] | [191..1] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MGKKTKRTAD SSSSEDEEEY VVEKVLDRRM VKGQVEYLLK WKGFSEEHNT WEPEKNLDCP 60
61 ELISEFMKKY KKMKEGENNK PREKSEGNKR KSSFSNSADD IK
|
| Detection Method: |  |
| Confidence: | 13.045757 |
| Match: | 2d9uA |
| Description: | No description for 2d9uA was found. |
|
Region A: Residues: [103-191] |
1 11 21 31 41 51
| | | | | |
1 SKKKREQSND IARGFERGLE PEKIIGATDS CGDLMFLMKW KDTDEADLVL AKEANVKCPQ 60
61 IVIAFYEERL TWHAYPEDAE NKEKESAKS
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 1s4zA |
| Description: | HP1 chromo shadow domain in complex with PXVXL motif of CAF-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| methylated histone residue binding | 3.42338304360938 | bayes_pls_golite062009 |
| chromatin binding | 3.1924157640698 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| protein binding | 2.66728689880621 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| histone binding | 2.00388175060339 | bayes_pls_golite062009 |
| transcription activator activity | 1.46529895769882 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.10020047862576 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.998957812785999 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| DNA helicase activity | 0.726970683178132 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.494788451379878 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
