| Protein: | gi|125561987 |
| Organism: | Oryza sativa Indica Group |
| Length: | 633 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125561987.
| Description | E-value | Query Range |
Subject Range |
|
|
680.0 | [0..1] | [633..13] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MAVAVPDHTF NNGYSSKNQI EGRSLSWKRV FVQTDKGSVL GIELERGENA HTVKKKLQLA 60
61 LNIPTEESSL TCGDQLLNND LSYICNDSPL LLTRNHMHRS CSTPCLSPNG KDVQHCDDSR 120
121
|
| Detection Method: |  |
| Confidence: | 24.69897 |
| Match: | 1yx5B |
| Description: | Solution Structure of S5a UIM-1/Ubiquitin Complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0934358341245259 | bayes_pls_golite062009 |
| protein binding | 0.03789551947602 | bayes_pls_golite062009 |
|
Region A: Residues: [121-300] |
1 11 21 31 41 51
| | | | | |
1 VIEIVGCTSP SARMKQLVDD IVRGIEKGIE PVAISSGMGG AYYFRDMWGE HAAIVKPTDE 60
61 EPFGPNNPKG FVGKSLGLPG LKKSVRVGET GSREVAAYLL DHKNFANVPP TMLVKITHSV 120
121 FHMNEGVDYK TKSSDNKTQA FSKLASLQEF IPHDYDASDH GTSSFPVSAV HRIGILDIRI 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [301-456] |
1 11 21 31 41 51
| | | | | |
1 FNTDRHAGNI LVRKLYNDAS RFETQTELIP IDHGLCLPES LEDPYFEWIH WPQASIPFSE 60
61 EDLEYITNLD PIKDAEMLRM ELHTIHEASL RVLVLSTTFL KEAAACGFCL SEIGEMMSRQ 120
121 FTRKEEEPSD LEVLCMEARN WVEEREWLLP QADFEG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [457-633] |
1 11 21 31 41 51
| | | | | |
1 EDDNESTQFD LDSEDDSTTF EASFSNNIRP IKGNSRDPPS KLAEVNEYVD EDDNNEFNKD 60
61 DVGTCTSPIT TWTPSTSNLS ISSNELSFSG RRKSHSGVAK NKVTSKINSN SYSGNHSAKE 120
121 KLPHNSSFAK LSDLSANKWS PFLEKFQDLL QSMFQDRKQT AGRNPWLTQR LGTSCQF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
