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Protein Overview: gi|125561987

General Information:
Name(s) found: gi|125561987 [NCBI NR]
Description(s) found:
  • gi|125561987|gb|EAZ07435.1| hypothetical protein OsI_29690 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 633 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAVPDHTF NNGYSSKNQI EGRSLSWKRV FVQTDKGSVL GIELERGENA HTVKKKLQLA  60
   61 LNIPTEESSL TCGDQLLNND LSYICNDSPL LLTRNHMHRS CSTPCLSPNG KDVQHCDDSR 120
  121 VIEIVGCTSP SARMKQLVDD IVRGIEKGIE PVAISSGMGG AYYFRDMWGE HAAIVKPTDE 180
  181 EPFGPNNPKG FVGKSLGLPG LKKSVRVGET GSREVAAYLL DHKNFANVPP TMLVKITHSV 240
  241 FHMNEGVDYK TKSSDNKTQA FSKLASLQEF IPHDYDASDH GTSSFPVSAV HRIGILDIRI 300
  301 FNTDRHAGNI LVRKLYNDAS RFETQTELIP IDHGLCLPES LEDPYFEWIH WPQASIPFSE 360
  361 EDLEYITNLD PIKDAEMLRM ELHTIHEASL RVLVLSTTFL KEAAACGFCL SEIGEMMSRQ 420
  421 FTRKEEEPSD LEVLCMEARN WVEEREWLLP QADFEGEDDN ESTQFDLDSE DDSTTFEASF 480
  481 SNNIRPIKGN SRDPPSKLAE VNEYVDEDDN NEFNKDDVGT CTSPITTWTP STSNLSISSN 540
  541 ELSFSGRRKS HSGVAKNKVT SKINSNSYSG NHSAKEKLPH NSSFAKLSDL SANKWSPFLE 600
  601 KFQDLLQSMF QDRKQTAGRN PWLTQRLGTS CQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 24.69897 Solution Structure of S5a UIM-1/Ubiquitin Complex
    2 View Details [121..300] MSA 1.084969 View MSA. No confident structure predictions are available.
    3 View Details [301..456] MSA 4.081966 View MSA. No confident structure predictions are available.
    4 View Details [457..633] MSA 1.037958 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle