| Protein: | gi|114625196, gi... |
| Organism: | Pan troglodytes |
| Length: | 464 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114625196, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-88 | [1..464] | [1..464] |
|
|
1.0E-87 | [1..464] | [1..464] |
|
|
2.0E-87 | [1..464] | [1..464] |
|
|
2.0E-87 | [1..464] | [1..464] |
|
|
3.0E-87 | [1..464] | [1..464] |
|
|
1.0E-86 | [1..464] | [1..464] |
|
|
4.0E-86 | [1..457] | [1..457] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 METEQPEETF PNTETNGEFG KRPAEDMEEE QAFKRSRNTD EMVELRILLQ SKNAGAVIGK 60
61 GGKNIKALRT DYNASVSVPD SSGPERILSI SADIETIGE
|
| Detection Method: |  |
| Confidence: | 23.522879 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [100-384] |
1 11 21 31 41 51
| | | | | |
1 ILKKIIPTLE EGLQLPSPTA TSQLPLESDA VECLNYQHYK GSDFDCELRL LIHQSLAGGI 60
61 IGVKGAKIKE LRENTQTTIK LFQECCPHST DRVVLIGGKP DRVVECIKII LDLISESPIK 120
121 GRAQPYDPNF YDETYDYGGF TMMFDDRRGR PVGFPMRGRG GFDRMPPGRG GRPMPPSRRD 180
181 YDDMSPRRGP PPPPPGRGGR GGSRARNLPL PPPPPPRGGD LMAYDRRGRP GDRYDGMVGF 240
241 SADETWDSAI DTWSPSEWQM AYEPQGGSGY DYSYAGGRGS YGDLG
|
| Detection Method: | |
| Confidence: | 2.99 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.35205331138538 | bayes_pls_golite062009 |
| mRNA binding | 4.67566555881601 | bayes_pls_golite062009 |
| nucleic acid binding | 3.42924343218473 | bayes_pls_golite062009 |
| binding | 3.31439627344982 | bayes_pls_golite062009 |
| 2.82262844310386 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 1.75736205236351 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42352554448586 | bayes_pls_golite062009 |
| DNA binding | 1.19165437089346 | bayes_pls_golite062009 |
| protein binding | 1.09698608157472 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.795008427109843 | bayes_pls_golite062009 |
| transcription factor activity | 0.392247064645943 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.158813798830905 | bayes_pls_golite062009 |
| catalytic activity | 0.1435046019283 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.137373295657998 | bayes_pls_golite062009 |
|
Region A: Residues: [385-464] |
1 11 21 31 41 51
| | | | | |
1 GPIITTQVTI PKDLAGSIIG KGGQRIKQIR HESGASIKID EPLEGSEDRI ITITGTQDQI 60
61 QNAQYLLQNS VKQYADVEGF
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1j5kA |
| Description: | HnRNP K, KH3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.76415077523249 | bayes_pls_golite062009 |
| mRNA binding | 5.07455187994216 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| 2.87067043110488 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 2.05765562493656 | bayes_pls_golite062009 |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.981003625136521 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
