YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125526148
Organism:	Oryza sativa Indica Group
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125526148.

Description	E-value	Query Range	Subject Range
gi\|222624450, gi... - gi\|222624450\|gb\|EEE58582.1\| hypothetical protein OsJ_09909 [Oryza sativa Japonica Group], gi\|2156940...	271.0	[0..1]	[385..1]
PSD13_BOVIN - 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1	261.0	[0..4]	[383..6]
gi\|73982052 - gi\|73982052\|ref\|XP_848457.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13 (...	261.0	[0..4]	[383..6]
gi\|62897349 - gi\|62897349\|dbj\|BAD96615.1\| proteasome 26S non-ATPase subunit 13 isoform 1 variant [Homo sapiens]	260.0	[0..4]	[383..6]
gi\|61372825, gi\|... - gi\|61372825\|gb\|AAX43919.1\| proteasome 26S subunit 13 [synthetic construct], gi\|32880133\|gb\|AAP88897....	259.0	[0..4]	[383..6]
PSD13_CHICK - 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1	258.0	[0..4]	[383..6]
PS13B_ARATH - 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana GN=RPN9B PE=1 SV=1	258.0	[0..2]	[385..3]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQYVEAQR QARPDLADAY ADLADLYQRK LWHQLTLKLD HFLQLPAAQT GDTIIQLYNN  60
   61 FISDFETKIN LLKLAHFAVI ASRQYPDKDA AISFLEGVTA KLRETRERRI DEPVLYVKMQ 120
  121 IAAINLEKGD QKECKKLLDE GKSTLDSMTD VDPTVHASFY WISSQYHKAC QEFAEFYKNA 180
  181 LLYLAYTTVE S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSESFKLDLA FDLSLAALLG DNIYNFGELL AHPIINSLIG TKVEWVYHML QAFNTGNLAL  60
   61 YQELCKVHNA ALSAQPALVQ NERKLLEKIN ILCLMEIIFT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [292-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSEDRTIPL SVIAERTKLS ISDVEYLLMK SLSVHLIEGI IDEVDSTVHV SWVQPRVLGI  60
   61 PQVKALRERL DAWVGKVHTT LLSVEAETPD LVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1ufmA
Description:	Solution structure of the PCI domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits