YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125526148
Organism:	Oryza sativa Indica Group
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125526148.

Description	E-value	Query Range	Subject Range
gi\|222624450, gi... - gi\|222624450\|gb\|EEE58582.1\| hypothetical protein OsJ_09909 [Oryza sativa Japonica Group], gi\|2156940...	271.0	[0..1]	[385..1]
PSD13_BOVIN - 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1	261.0	[0..4]	[383..6]
gi\|73982052 - gi\|73982052\|ref\|XP_848457.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13 (...	261.0	[0..4]	[383..6]
gi\|62897349 - gi\|62897349\|dbj\|BAD96615.1\| proteasome 26S non-ATPase subunit 13 isoform 1 variant [Homo sapiens]	260.0	[0..4]	[383..6]
gi\|61372825, gi\|... - gi\|61372825\|gb\|AAX43919.1\| proteasome 26S subunit 13 [synthetic construct], gi\|32880133\|gb\|AAP88897....	259.0	[0..4]	[383..6]
PSD13_CHICK - 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1	258.0	[0..4]	[383..6]
PS13B_ARATH - 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana GN=RPN9B PE=1 SV=1	258.0	[0..2]	[385..3]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQYVEAQR QARPDLADAY ADLADLYQRK LWHQLTLKLD HFLQLPAAQT GDTIIQLYNN  60
   61 FISDFETKIN LLKLAHFAVI ASRQYPDKDA AISFLEGVTA KLRETRERRI DEPVLYVKMQ 120
  121 IAAINLEKGD QKECKKLLDE GKSTLDSMTD VDPTVHASFY WISSQYHKAC QEFAEFYKNA 180
  181 LLYLAYTTVE S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSESFKLDLA FDLSLAALLG DNIYNFGELL AHPIINSLIG TKVEWVYHML QAFNTGNLAL  60
   61 YQELCKVHNA ALSAQPALVQ NERKLLEKIN ILCLMEIIFT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.711	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.664	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.610	a.7.6	Ribosomal protein S20
View	Download	0.604	a.77.1	DEATH domain
View	Download	0.585	a.7.6	Ribosomal protein S20
View	Download	0.584	a.46.1	Methionine synthase domain
View	Download	0.571	a.46.1	Methionine synthase domain
View	Download	0.525	a.118.11	Cytochrome c oxidase subunit E

Predicted Domain #3

Region A:
Residues: [292-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSEDRTIPL SVIAERTKLS ISDVEYLLMK SLSVHLIEGI IDEVDSTVHV SWVQPRVLGI  60
   61 PQVKALRERL DAWVGKVHTT LLSVEAETPD LVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1ufmA
Description:	Solution structure of the PCI domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits