YRC Public Data Repository - Protein Structure Prediction

Protein:	FABPL_RAT
Organism:	Rattus norvegicus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABPL_RAT.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	170.0	[0..2]	[126..247]
gi\|74007087 - gi\|74007087\|ref\|XP_548843.2\| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP) (Ad...	155.0	[0..2]	[126..55]
IPI:IPI00190799.... - Ensembl_locations(Chr-bp):None Retinoic acid-binding protein I, cellular RET3_BOVIN, RABP... - (P62964) Retinoic acid-binding protein I, cellular (CRABP-I), (P62964) Cellular retinoic acid-bindin... RABP1_MOUSE, RET... - (P62965) Retinoic acid-binding protein I, cellular (CRABP-I), (P62965) Cellular retinoic acid-bindin...	155.0	[0..2]	[126..2]
FABP7_CHICK - Fatty acid-binding protein, brain OS=Gallus gallus GN=FABP7 PE=2 SV=2	154.0	[0..2]	[126..4]
gi\|48146151 - gi\|48146151\|emb\|CAG33298.1\| CRABP1 [Homo sapiens]	154.0	[0..2]	[126..3]
FABP7_BOVIN - Fatty acid-binding protein, brain OS=Bos taurus GN=FABP7 PE=1 SV=2	154.0	[0..2]	[126..4]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSGKYQVQ SQENFEPFMK AMGLPEDLIQ KGKDIKGVSE IVHEGKKVKL TITYGSKVIH  60
   61 NEFTLGEECE LETMTGEKVK AVVKMEGDNK MVTTFKGIKS VTEFNGDTIT NTMTLGDIVY 120
  121 KRVSKRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2f73A
Description:	Crystal structure of human fatty acid binding protein 1 (FABP1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
long-chain fatty acid transporter activity	5.31242454679135	bayes_pls_golite062009
fatty acid transporter activity	5.05947161650978	bayes_pls_golite062009
lysophospholipid transporter activity	4.87368345652673	bayes_pls_golite062009
lipid transporter activity	4.30505384117861	bayes_pls_golite062009
binding	2.93830472620404	bayes_pls_golite062009
bile acid binding	1.56765865943557	bayes_pls_golite062009
transcription regulator activity	1.48205265725428	bayes_pls_golite062009
protein binding	1.23450129884619	bayes_pls_golite062009
retinol transporter activity	1.2139173346293	bayes_pls_golite062009
prostaglandin-D synthase activity	1.18764036773412	bayes_pls_golite062009
lipid binding	0.936781587098929	bayes_pls_golite062009
fatty acid binding	0.761923641769607	bayes_pls_golite062009
retinoid binding	0.451050759082675	bayes_pls_golite062009
isoprenoid binding	0.394662096985878	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: