YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157820759, gi...
Organism:	Rattus norvegicus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157820759, gi....

Description	E-value	Query Range	Subject Range
gi\|558545, gi\|10... - gi\|558545\|emb\|CAA85321.1\| protein containing C-terminal RING-finger [Lotus japonicus], gi\|1771195\|em...	107.0	[0..3]	[110..449]
gi\|125549990 - gi\|125549990\|gb\|EAY95812.1\| hypothetical protein OsI_17683 [Oryza sativa Indica Group] HIP1_ORYSJ - Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2	104.0	[0..3]	[103..571]
gi\|4240031 - gi\|4240031\|dbj\|BAA74802.1\| DNA binding zinc finger protein (Pspzf) [Pisum sativum]	102.0	[0..3]	[110..372]
gi\|71896893, gi\|... - gi\|71896893\|ref\|NP_001026478.1\| ring finger protein 7 [Gallus gallus], gi\|53133728\|emb\|CAG32193.1\| h...	102.0	[0..1]	[113..1]
MBR1_ARATH - E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana GN=MBR1 PE=1 SV=1	102.0	[0..3]	[105..604]
gi\|92868263 - gi\|92868263\|gb\|ABE78334.1\| Zinc finger, RING-type; RINGv [Medicago truncatula]	101.0	[0..3]	[110..456]
gi\|1076498, gi\|5... - gi\|558543\|emb\|CAA85320.1\| C-terminal zinc-finger [Glycine max], pir\|\|S49445 RING finger protein Pzf ...	100.0	[0..3]	[110..288]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVEDGEEP CVLSSHSGSA GSKSGGDKMF SLKKWNAVAM WSWDVECDTC AICRVQVMDA  60
   61 CLRCQAENKQ EDCVVVWGEC NHSFHNCCMS LWVKQNNRCP LCQQDWVVQR IGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	1u6gB
Description:	Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits