| Protein: | MYD88_MOUSE |
| Organism: | Mus musculus |
| Length: | 296 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYD88_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
290.0 | [0..1] | [296..1] |
|
|
290.0 | [0..1] | [296..1] |
|
|
279.0 | [0..1] | [296..14] |
|
|
273.0 | [0..1] | [296..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MSAGDPRVGS GSLDSFMFSI PLVALNVGVR RRLSLFLNPR TPVAADWTLL AEEMGFEYLE 60
61 IRELETRPDP TRSLLDAWQG RSGASVGRLL ELLALLDRED ILKELKSRIE EDCQKYLGKQ 120
121 QNQESEKPLQ VARVESSVPQ
|
| Detection Method: |  |
| Confidence: | 16.30103 |
| Match: | 1ygoA |
| Description: | Solution Structure of the pelle Death Domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 3.50518632995622 | bayes_pls_golite062009 |
| binding | 2.81925838257497 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.66783807193588 | bayes_pls_golite062009 |
| receptor activity | 1.49139108045528 | bayes_pls_golite062009 |
| enzyme binding | 0.78444772609923 | bayes_pls_golite062009 |
| tumor necrosis factor binding | 0.732234543123958 | bayes_pls_golite062009 |
| death receptor activity | 0.627802739213643 | bayes_pls_golite062009 |
| apoptotic protease activator activity | 0.487782160925381 | bayes_pls_golite062009 |
| tumor necrosis factor receptor activity | 0.428938788578756 | bayes_pls_golite062009 |
| Pyrin domain binding | 0.307516801321075 | bayes_pls_golite062009 |
| identical protein binding | 0.206123549797411 | bayes_pls_golite062009 |
| signal transducer activity | 0.201651915574531 | bayes_pls_golite062009 |
| molecular transducer activity | 0.201651915574531 | bayes_pls_golite062009 |
| protein domain specific binding | 0.151782936408674 | bayes_pls_golite062009 |
| death domain binding | 0.119918387246423 | bayes_pls_golite062009 |
| cytokine binding | 0.0519010687665362 | bayes_pls_golite062009 |
| peptidase activator activity | 0.0460645022887266 | bayes_pls_golite062009 |
| catalytic activity | 0.043183590691418 | bayes_pls_golite062009 |
|
Region A: Residues: [141-296] |
1 11 21 31 41 51
| | | | | |
1 TKELGGITTL DDPLGQTPEL FDAFICYCPN DIEFVQEMIR QLEQTDYRLK LCVSDRDVLP 60
61 GTCVWSIASE LIEKRCRRMV VVVSDDYLQS KECDFQTKFA LSLSPGVQQK RLIPIKYKAM 120
121 KKDFPSILRF ITICDYTNPC TKSWFWTRLA KALSLP
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1fywA |
| Description: | Toll-like receptor 2, TLR2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded RNA binding | 4.32086914489227 | bayes_pls_golite062009 |
| siRNA binding | 3.8837709376582 | bayes_pls_golite062009 |
| nucleic acid binding | 2.46815521682665 | bayes_pls_golite062009 |
| binding | 2.31499720771829 | bayes_pls_golite062009 |
| protein binding | 2.10005190551596 | bayes_pls_golite062009 |
| receptor activity | 1.91178122133017 | bayes_pls_golite062009 |
| 1.86047705807897 | bayes_pls_golite062009 | |
| lipopolysaccharide binding | 1.79927076993237 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.68133457503491 | bayes_pls_golite062009 |
| DNA binding | 1.10666978727222 | bayes_pls_golite062009 |
| RNA binding | 0.964496567264848 | bayes_pls_golite062009 |
| signal transducer activity | 0.574489626172021 | bayes_pls_golite062009 |
| molecular transducer activity | 0.574489626172021 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.0787292540642052 | bayes_pls_golite062009 |
| growth factor activity | 0.0066769104515047 | bayes_pls_golite062009 |
