YRC Public Data Repository - Protein Structure Prediction

Protein:	TCTP_MOUSE
Organism:	Mus musculus
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCTP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114651462 - gi\|114651462\|ref\|XP_001154834.1\| PREDICTED: hypothetical protein LOC452575 isoform 3 [Pan troglodyte... gi\|119629139 - gi\|119629139\|gb\|EAX08734.1\| tumor protein, translationally-controlled 1, isoform CRA_d [Homo sapiens...	314.0	[0..1]	[172..1]
gi\|55662177 - gi\|55662177\|emb\|CAH72035.1\| tumor protein, translationally-controlled 1 [Homo sapiens]	304.0	[0..1]	[172..1]
gi\|109019022 - gi\|109019022\|ref\|XP_001112392.1\| PREDICTED: tumor protein, translationally-controlled 1 [Macaca mula...	303.0	[0..1]	[172..1]
TCTP_BOVIN - Translationally-controlled tumor protein OS=Bos taurus GN=TPT1 PE=2 SV=1	302.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIYRDLISH DELFSDIYKI REIADGLCLE VEGKMVSRTE GAIDDSLIGG NASAEGPEGE  60
   61 GTESTVVTGV DIVMNHHLQE TSFTKEAYKK YIKDYMKSLK GKLEEQKPER VKPFMTGAAE 120
  121 QIKHILANFN NYQFFIGENM NPDGMVALLD YREDGVTPFM IFFKDGLEME KC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.522879
Match:	2hr9A
Description:	No description for 2hr9A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors	3.4377744251418	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	3.14392283789517	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	2.6167603393936	bayes_pls_golite062009
binding	2.26574571365153	bayes_pls_golite062009
transition metal ion binding	1.89566171684057	bayes_pls_golite062009
cation binding	1.8695053562775	bayes_pls_golite062009
metal ion binding	1.8695053562775	bayes_pls_golite062009
ion binding	1.86234474080078	bayes_pls_golite062009
nucleic acid binding	1.14994807703391	bayes_pls_golite062009
transcription regulator activity	1.009242671721	bayes_pls_golite062009
DNA binding	0.841663070276259	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
protein binding	0.327945052023132	bayes_pls_golite062009
transcription factor activity	0.202907039530709	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: