| Protein: | ham-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 390 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ham-2.
| Description | E-value | Query Range |
Subject Range |
|
|
587.0 | [0..3] | [386..2507] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MPYRAELKRP DLKGSFPCSI CQKVFCHSSS LSRHRMQAHF KSYTCTTCNN EIPSNDTLRS 60
61 HMYRVHNITR MFMCRCCNWA FPDKTSLHIH MQSMLKNGTP GEAAVLAKSS DDSTSESGSP 120
121 RQSPPFSPDL LMQKRMLQVA ANNNNIGSIF PTLLKSPDSK SMFPLDLSNM GPSQFLSAWL 180
181 ANNPINTAAL NLAAQ
|
| Detection Method: |  |
| Confidence: | 58.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [196-260] |
1 11 21 31 41 51
| | | | | |
1 QTPSKDSIQS SNISDYDDLE VQTTEEDIKF EVESSDVSPR SVIVKTEPTF KRELEHDADI 60
61 DVEGD
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.7678140110688 | bayes_pls_golite062009 |
| transcription regulator activity | 1.36521420117645 | bayes_pls_golite062009 |
| DNA binding | 1.25676119489845 | bayes_pls_golite062009 |
| nucleic acid binding | 1.23181967524688 | bayes_pls_golite062009 |
| transcription factor activity | 0.48221167392496 | bayes_pls_golite062009 |
| protein binding | 0.286371122239253 | bayes_pls_golite062009 |
|
Region A: Residues: [261-390] |
1 11 21 31 41 51
| | | | | |
1 DGEPPLKMTI DDKNIHISHD QPSPTVSDSH ISGGSSSHSG ESLKCFDCQV ARGKLVAVED 60
61 KCRAYEKTIR ELQVQVDFLR KIQPNPMPPV MLPPPMMPMP SPGPNNLFQN PAMRMLLNNL 120
121 IHMNRPSVVP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
