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View Structure Prediction Details

Protein: gi|108752170, gi...
Organism: synthetic construct
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108752170, gi....

Description E-value Query
Range
Subject
Range
PGGT1B - protein geranylgeranyltransferase type I, beta subunit
0.0 [1..377] [1..377]
gi|114601194 - gi|114601194|ref|XP_526978.2| PREDICTED: similar to geranylgeranyltransferase type I beta-subunit [P...
0.0 [1..377] [1..377]
PGTB1_BOVIN - Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1
0.0 [1..377] [1..377]
PGTB1_RAT - Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1
0.0 [1..377] [1..377]
PGTB1_MOUSE - Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=1 SV=1
0.0 [1..377] [1..377]
gi|73970468 - gi|73970468|ref|XP_538560.2| PREDICTED: similar to protein geranylgeranyltransferase type I, beta su...
0.0 [1..377] [1..377]
gi|89269110 - gi|89269110|emb|CAJ81920.1| protein geranylgeranyltransferase type I, beta subunit [Xenopus tropical...
0.0 [9..377] [1..372]
gi|67678265, gi|... - gi|67678265|gb|AAH97794.1| MGC115505 protein [Xenopus laevis], gi|147907072|ref|NP_001089525.1| hypo...
0.0 [5..377] [3..372]

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Predicted Domain #1
Region A:
Residues: [1-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATEDERLA GSGEGERLDF LRDRHVRFFQ RCLQVLPERY SSLETSRLTI AFFALSGLDM  60
   61 LDSLDVVNKD DIIEWIYSLQ VLPTEDRSNL NRCGFRGSSY LGIPFNPSKA PGTAHPYDSG 120
  121 HIAMTYTGLS CLVILGDDLS RVNKEACLAG LRALQLEDGS FCAVPEGSEN DMRFVYCASC 180
  181 ICYMLNNWSG MDMKKAITYI RRSMSYDNGL AQGAGLESHG GSTFCGIASL CLMGKLEEVF 240
  241 SEKELNRIKR WCIMRQQNGY HGRPNKPVDT CYSFWVGATL KLLKIFQYTN FEKNRNYILS 300
  301 TQDRLVGGFA KWPDSHPDAL HAYFGICGLS LMEESGICKV HPALNVSTRT SERLLDLHQS 360
  361 WKTKDSKQCS ENVHIST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 1n4pB
Description: Protein Geranylgeranyltransferase type-I Complexed with Geranylgeranyl Diphosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein prenyltransferase activity 13.7736019666673 bayes_pls_golite062009
protein geranylgeranyltransferase activity 12.9757276506747 bayes_pls_golite062009
Rab geranylgeranyltransferase activity 12.8088011327065 bayes_pls_golite062009
prenyltransferase activity 11.6786310564018 bayes_pls_golite062009
CAAX-protein geranylgeranyltransferase activity 10.5569796788906 bayes_pls_golite062009
protein farnesyltransferase activity 4.15546866363415 bayes_pls_golite062009
binding 1.68564752993879 bayes_pls_golite062009
protein binding 1.45455287827127 bayes_pls_golite062009
transferase activity 1.0950430724883 bayes_pls_golite062009
enzyme regulator activity 0.854896924803117 bayes_pls_golite062009
catalytic activity 0.497699107100544 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle