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View Structure Prediction Details

Protein: gi|94987786, gi|...
Organism: Streptococcus pyogenes MGAS9429
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94987786, gi|....

Description E-value Query
Range
Subject
Range
gi|19747447, gi|... - gi|19747447|gb|AAL96979.1| putative L-ribulose 5-phosphate [Streptococcus pyogenes MGAS8232], gi|197...
295.0 [0..1] [242..14]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRGWHNMA KNLQEMRERV CAANKSLPQH GLVKFTWGNV SEVCRELGRI VIKPSGVDYD  60
   61 LLTPENMVVT DLDGNVVEGD LNPSSDLPTH VELYKAWPEV GGIVHTHSTE AVGWAQAGRD 120
  121 IPFYGTTHAD YFYGPVPCAR SLTKAEVDGA YEQETGNVIL EEFSKRGLDP MAVPGIVVRN 180
  181 HGPFTWGKTP EQAVYHSVVL EEVARMNRLT EQINPRVEPA PRYIMDKHYL RKHGPNAYYG 240
  241 QK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 1jdiA
Description: L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-ribulose-phosphate 4-epimerase activity 3.50507333471987 bayes_pls_golite062009
L-fuculose-phosphate aldolase activity 2.43949811564444 bayes_pls_golite062009
catalytic activity 1.9511172460719 bayes_pls_golite062009
aldehyde-lyase activity 1.08084403816388 bayes_pls_golite062009
lyase activity 0.77829514510632 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.42493443904865 bayes_pls_golite062009
carbon-carbon lyase activity 0.2178091782272 bayes_pls_golite062009
racemase and epimerase activity 0.15063402811264 bayes_pls_golite062009
isomerase activity 0.0458367676418101 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle