YRC Public Data Repository - Protein Structure Prediction

Protein:	SFC3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	1339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFC3_SCHPO.

Description	E-value	Query Range	Subject Range
orf19.11314 - orf19.3833 CGDID:CAL0002026 Assembly 19, Contig19-20192 (122905, 120851) CDS, reverse complemented, ... gi\|46438940, gi\|... - gi\|68477532\|ref\|XP_717237.1\| hypothetical protein CaO19.3833 [Candida albicans SC5314], gi\|68477373\|...	701.0	[0..666]	[1335..1]
gi\|44984468, gi\|... - gi\|45198517\|ref\|NP_985546.1\| AFL002Cp [Ashbya gossypii ATCC 10895], gi\|44984468\|gb\|AAS53370.1\| AFL00... gi\|44984468 - gi\|44984468\|gb\|AAS53370.1\| AFL002Cp [Ashbya gossypii ATCC 10895]	692.0	[0..631]	[1338..503]
TFC3_YEAST - Transcription factor tau 138 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... TFC3 - Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); ...	616.0	[0..2]	[771..8]
gi\|28950308, gi\|... - gi\|32412546\|ref\|XP_326753.1\| hypothetical protein [Neurospora crassa], gi\|28950308\|emb\|CAD70838.1\| h... gi\|85099370 - gi\|85099370\|ref\|XP_960777.1\| hypothetical protein NCU01260 [Neurospora crassa OR74A]	594.0	[0..418]	[1338..1412]
gi\|39968709, gi\|... - gi\|39968709\|ref\|XP_365745.1\| hypothetical protein MG02447.4 [Magnaporthe grisea 70-15], gb\|EAA54462....	577.0	[0..832]	[1339..1485]
gi\|49107000, gi\|... - gi\|67900710\|ref\|XP_680611.1\| hypothetical protein AN7342.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	575.0	[0..750]	[1327..1262]
gi\|46126167, gi\|... - gi\|46126167\|ref\|XP_387637.1\| hypothetical protein FG07461.1 [Gibberella zeae PH-1], gi\|42554635\|gb\|E...	535.0	[0..805]	[1338..1438]
gi\|49653841, gi\|... - gi\|50419301\|ref\|XP_458175.1\| hypothetical protein DEHA0C12397g [Debaryomyces hansenii CBS767], gi\|49...	476.0	[0..3]	[1335..9]
gi\|15218016, gi\|... - gi\|15218016\|ref\|NP_176158.1\| transcription factor-related [Arabidopsis thaliana], gi\|14475936\|gb\|AAK...	439.0	[0..1]	[556..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLIRHCSE EIALDGSSGC SIDRLWEFAA NFFFRQGIVQ NLDDNYKTFV WPLILKEDGI  60
   61 EVWIEDEDAT GLRSKMQEIP WNYQDITIEL RARIRLFASE DRQWLTLTYK TKTDSKIQPL 120
  121 AFELLSCISR YRQEGVDRIQ LCKETKQEPR SVYGRIQALE DASLISKVAI NRSRAQTALL 180
  181 VLKRFESEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STINETVAQV SGKQIYNTEK IRSNICDAVQ SSRNGICRHV DARAMVNLNH SRWERRYYAR  60
   61 QVTYLHNNGY LRKCLTFVPN SPERCIRCLQ FIKPYISSLD ATEDDVDFTE VDDIPEDDEL 120
  121 EEEEPLLPSK EEFDASFLQP LADVGPTLPQ WSRFRPLEFQ CFVLIRNAGF HGVITLQILS 180
  181 GLTGIRFNKP LFKLLGSLVE HRSSVPNHLS HMSITRFEDK TKKSRQYRYF TLQSQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [426-648]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLIRDGIPA ETISKLLPHV HSLAGEFSPI DSSLFLNSLH HKGNMESNAE VSPDGMTLLP  60
   61 RKRGRPRKSA NISVTSSPIR PSKNENNLPS LAISPVSEGF IQNATISTPS TSSNLSIAGS 120
  121 LTPSKTSRIY RGLAPLKNPE FNEDHVKKAE HLEPLLNVSS SVPSKNFTVS SPDHLKYGNT 180
  181 SSLQVSDSQS SIDLDSSFHY PVSVDSQLSH STGSLMANFS SPT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [649-886]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKRRLESVDF IFLQRKGLIL SYLVEQNGAF EISRKMFEDL ADLKVRRNPE TSRTVMDRRT  60
   61 FQQTLEKLMQ EKKVRKLVIA TNNGLGKLVR KDIVVQYDMK PDSPRFQQLR AQITTPEIEK 120
  121 QSTPEILKDV DVDFLKRNTS LSRRKSMPAE IKRHKESSET KPVDKEEVKK NEKEKDDPMR 180
  181 LAQQLLESLA PDFALHENTQ QKSPVEKPKK LRKDRYASVE EFDYFSSTEH ASKRSVKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [887-1003]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKNDFTSDED ETLIRAVVIT QIYYGGTNRL IKWEAVQKCF PNRDIYALTR RYLSIRQHTK  60
   61 FKGLQQFLSE NWQQMYKDAV SRKDLMPYPD SVDDFDPTPY VKASCRPYMI SSSNLAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [1004-1237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRLPRDLVDV YETYNIEVVK QETNFREMIF DPSLSVASKM NAYCDMPFTM PLSLNDKQNN  60
   61 EGDENCEKGQ LFDAKSTIKS IVAIPDATYD ARFSQERLMQ YPEDILIAAH QELLDKRIIT 120
  121 RVNSENSRLQ PGRNFQFTEK FASSLKSPLP PFLLSQAKRF NKFLLEGFQN HKNHLFEETS 180
  181 NSGTLACILD LLSQGKLQIS IVGSKFNEYG LSEGYRTRLL EHDNINVTLV LSGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [1238-1339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESESKKNYGV TEKLATPPSH EPRLWLNGKC ELIEMIWMNI EQSIVYQLLR KPGILRSQLT  60
   61 NLLFPGLEPR EFNEVLDYFI AAGAAIEKDG LYLNHNYLFK LT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits