| Protein: | gi|19115426 |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 258 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19115426.
| Description | E-value | Query Range |
Subject Range |
|
|
210.0 | [0..11] | [257..4] |
|
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209.0 | [0..11] | [257..4] |
|
|
209.0 | [0..1] | [257..1] |
|
|
205.0 | [0..1] | [257..1] |
|
|
205.0 | [0..17] | [257..6] |
|
|
204.0 | [0..11] | [257..4] |
|
|
204.0 | [0..23] | [257..4] |
|
|
202.0 | [0..1] | [257..1] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MLAPTAAVNV TNEGENGMFS PKFSLNYSLT TVSDNVMIDT TRGEIEFSDS AVNGTMDIEG 60
61 APKFAPA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.607 | b.1.2 | Fibronectin type III |
| View | Download | 0.657 | g.17.1 | Cystine-knot cytokines |
| View | Download | 0.606 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.600 | d.17.1 | Cystatin/monellin |
| View | Download | 0.587 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
|
Region A: Residues: [68-258] |
1 11 21 31 41 51
| | | | | |
1 KTSAEKKRGA KPQMRRVPIP PHRMTPLRNV WPKLYPPLVE HLLLQVRMNT KSRSVELRES 60
61 KATKDPGALQ KGMDFVQAFA LGFDIDDAIA LLRLDDLYID TFEIKDVKTL QGDHLSRAIG 120
121 RIAGQGGKTK FAIENASRTR IVLADSKIHI LGGFTNIRIA KDAVVSLILG SPPGKVYANL 180
181 RNAAARAKER I
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.49437316734899 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| mRNA binding | 2.83121485081867 | bayes_pls_golite062009 |
| protein binding | 1.56382009529204 | bayes_pls_golite062009 |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| 0.559294837259864 | bayes_pls_golite062009 | |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
