YRC Public Data Repository - Protein Structure Prediction

Protein:	NIF3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIF3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|226819222 - gi\|226819222\|ref\|ZP_03808341.1\| hypothetical protein LgasM_00975 [Lactobacillus gasseri MV-22] gi\|238833970, gi... - gi\|238853398\|ref\|ZP_04643777.1\| conserved hypothetical protein [Lactobacillus gasseri 202-4], gi\|238... gi\|23003600 - gi\|23003600\|ref\|ZP_00047257.1\| COG0327: Uncharacterized conserved protein [Lactobacillus gasseri] gi\|116095330, gi... - gi\|23003600\|ref\|ZP_00047257.1\| hypothetical protein Lgas_03001422 [Lactobacillus gasseri ATCC 33323]...	259.0	[0..4]	[278..1]
GCH1L_STRCO - GTP cyclohydrolase 1 type 2 homolog OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) ... Y2301_STRCO, YN0... - (Q9L012) Hypothetical UPF0135 protein SCO2301, UPF0135 protein SCO2301 OS=Streptomyces coelicolor GN...	258.0	[0..4]	[276..1]
gi\|41583517, gi\|... - gi\|42519229\|ref\|NP_965159.1\| hypothetical protein LJ1304 [Lactobacillus johnsonii NCC 533], gi\|41583...	257.0	[0..4]	[278..1]
gi\|225861441, gi... - gi\|225861441\|ref\|YP_002742950.1\| hypothetical protein SPT_1550 [Streptococcus pneumoniae Taiwan19F-1... gi\|242244826, gi... - gi\|242244826\|ref\|ZP_04799263.1\| protein of hypothetical function DUF34 [Streptococcus pneumoniae TCH... gi\|116517031, gi... - gi\|116517031\|ref\|YP_816891.1\| hypothetical protein SPD_1434 [Streptococcus pneumoniae D39], gi\|11607... gi\|148988662, gi... - gi\|148988662\|ref\|ZP_01820095.1\| hypothetical protein CGSSp6BS73_09059 [Streptococcus pneumoniae SP6-... gi\|25509065 - pir\|\|E98054 conserved hypothetical protein spr1462 [imported] - Streptococcus pneumoniae (strain R6) gi\|15903505, gi\|... - gi\|15903505\|ref\|NP_359055.1\| hypothetical protein spr1462 [Streptococcus pneumoniae R6], gi\|15459119...	251.0	[0..5]	[278..1]
gi\|72162354, gi\|... - gi\|72162354\|ref\|YP_290011.1\| hypothetical protein Tfu_1955 [Thermobifida fusca YX], gi\|71916086\|gb\|A...	250.0	[0..5]	[276..1]
gi\|24379860, gi\|... - gi\|24379860\|ref\|NP_721815.1\| hypothetical protein SMU.1463c [Streptococcus mutans UA159], gi\|2437783...	250.0	[0..5]	[278..1]
gi\|227070038, gi... - gi\|227364891\|ref\|ZP_03848936.1\| possible NIF3-like protein [Lactobacillus reuteri MM2-3], gi\|2270700... gi\|227194290, gi... - gi\|227531080\|ref\|ZP_03961129.1\| possible NIF3-like protein [Lactobacillus reuteri MM4-1A], gi\|227194... gi\|148543978, gi... - gi\|89090878\|ref\|ZP_01163913.1\| Protein of unknown function DUF34 [Lactobacillus reuteri JCM 1112], g...	250.0	[0..4]	[278..1]
gi\|116098754, gi... - gi\|116333407\|ref\|YP_794934.1\| hypothetical protein LVIS_0760 [Lactobacillus brevis ATCC 367], gi\|116...	249.0	[0..5]	[278..1]
tr\|Q87WV9\|Q87WV9... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4434 PE=3 SV=1 gi\|28854821, gi\|... - gi\|28871569\|ref\|NP_794188.1\| hypothetical protein PSPTO_4434 [Pseudomonas syringae pv. tomato str. D... gi\|213928443, gi... - gi\|213966593\|ref\|ZP_03394744.1\| conserved hypothetical protein TIGR00486 [Pseudomonas syringae pv. t...	248.0	[0..4]	[264..2]
gi\|91803567, gi\|... - gi\|92089650\|ref\|ZP_01274585.1\| Protein of unknown function DUF34 [Lactobacillus reuteri 100-23], gi\|...	248.0	[0..4]	[278..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKANISSKL KKVVESIYNP KLADSWDNTG LLLEAPFPRT NASSVLLTID LTEKVAEEAI  60
   61 SNKLVSSIVA YHPIIFRGLK AITMEDPQQR SLLKLAAEGI HVYSPHTAVD AAVDGVNDWL 120
  121 AQGIAGGRNN IKSVVPTQQN SVMAEAEGYG RICELKIPTT LRELVQRAKE LTGLQYVQVC 180
  181 APNGLDSHIS KVSLCAGSGG SVVMNTDADL YFTGELSHHQ VLAAMAKGIS VILCGHSNTE 240
  241 RGYLKDVMCQ KLASSFHKEG VDANVIVSSM DADPLTTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	2fywA
Description:	No description for 2fywA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.36275821588531	bayes_pls_golite062009
transcription factor binding	0.8197800099048	bayes_pls_golite062009
protein binding	0.188326419539465	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: