YRC Public Data Repository - Protein Structure Prediction

Protein:	YOM2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	749 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOM2_SCHPO.

Description	E-value	Query Range	Subject Range
orf19.671 - PSP1 CGDID:CAL0001090 Assembly 19, Contig19-10064 (39603, 41612) CDS, translated using codon table 1... gi\|46435318, gi\|... - gi\|68484546\|ref\|XP_713804.1\| hypothetical protein CaO19.671 [Candida albicans SC5314], gi\|46435318\|g...	308.0	[0..290]	[733..84]
gi\|67516329, gi\|... - gi\|67516329\|ref\|XP_658050.1\| hypothetical protein AN0446.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	260.0	[0..81]	[744..2]
gi\|992654 - gi\|992654\|gb\|AAA93076.1\| high copy suppressor of polymerase alpha mutations	235.0	[0..538]	[735..519]
gi\|50422663, gi\|... - gi\|50422663\|ref\|XP_459908.1\| hypothetical protein DEHA0E14421g [Debaryomyces hansenii CBS767], gi\|49...	226.0	[0..460]	[732..239]
gi\|47570436, gi\|... - gi\|47570436\|ref\|ZP_00241072.1\| Tpl protein [Bacillus cereus G9241], gi\|47552894\|gb\|EAL11309.1\| Tpl p... gi\|51978652, gi\|... - gi\|52145183\|ref\|YP_081645.1\| signal peptidase-like protein [Bacillus cereus E33L], gi\|51978652\|gb\|AA... gi\|49183066, gi\|... - gi\|49183066\|ref\|YP_026318.1\| hypothetical protein BAS0031 [Bacillus anthracis str. Sterne], gi\|49176... gi\|49481560, gi\|... - gi\|49481560\|ref\|YP_034386.1\| signal peptidase-like protein [Bacillus thuringiensis serovar konkukian... gi\|42779111, gi\|... - gi\|42779111\|ref\|NP_976358.1\| hypothetical protein BCE_0030 [Bacillus cereus ATCC 10987], gi\|42735026... gi\|118475804, gi... - gi\|118475804\|ref\|YP_892955.1\| signal peptidase-like protein [Bacillus thuringiensis str. Al Hakam], ... gi\|47525285, gi\|... - gi\|47525285\|ref\|YP_016634.1\| hypothetical protein GBAA0029 [Bacillus anthracis str. 'Ames Ancestor']... gi\|21397995, gi\|... - gi\|65317492\|ref\|ZP_00390451.1\| COG1774: Uncharacterized homolog of PSP1 [Bacillus anthracis str. A20... gi\|30260222, gi\|... - gi\|30260222\|ref\|NP_842599.1\| hypothetical protein BA0029 [Bacillus anthracis str. Ames], gi\|30253543... gi\|254682341 - gi\|254682341\|ref\|ZP_05146202.1\| signal peptidase-like protein [Bacillus anthracis str. CNEVA-9066] gi\|221237849, gi... - gi\|222093802\|ref\|YP_002527851.1\| signal peptidase-like protein [Bacillus cereus Q1], gi\|221237849\|gb... gi\|254724173 - gi\|254724173\|ref\|ZP_05185958.1\| signal peptidase-like protein [Bacillus anthracis str. A1055] gi\|254733568 - gi\|254733568\|ref\|ZP_05191289.1\| signal peptidase-like protein [Bacillus anthracis str. Western North... gi\|254744664 - gi\|254744664\|ref\|ZP_05202343.1\| signal peptidase-like protein [Bacillus anthracis str. Kruger B] gi\|254756369 - gi\|254756369\|ref\|ZP_05208398.1\| signal peptidase-like protein [Bacillus anthracis str. Vollum] gi\|254762425 - gi\|254762425\|ref\|ZP_05214267.1\| signal peptidase-like protein [Bacillus anthracis str. Australia 94]	217.0	[0..556]	[730..5]
gi\|49524319, gi\|... - gi\|50285175\|ref\|XP_445016.1\| unnamed protein product [Candida glabrata], gi\|49524319\|emb\|CAG57916.1\|... gi\|49524319 - gi\|49524319\|emb\|CAG57916.1\| unnamed protein product [Candida glabrata]	214.0	[0..529]	[734..383]
gi\|67917098, gi\|... - gi\|67917098\|ref\|ZP_00510773.1\| PSP1 C-terminal conserved region [Clostridium thermocellum ATCC 27405... gi\|196252400, gi... - gi\|196252400\|ref\|ZP_03151058.1\| PSP1 domain protein [Clostridium thermocellum DSM 4150], gi\|19619812...	208.0	[0..555]	[730..1]
gi\|28918287, gi\|... - gi\|32415473\|ref\|XP_328216.1\| hypothetical protein [Neurospora crassa], gi\|28918287\|gb\|EAA27964.1\| hy... gi\|85083838 - gi\|85083838\|ref\|XP_957200.1\| hypothetical protein [Neurospora crassa OR74A]	206.0	[0..83]	[737..2]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTVVGETEL NRLNNGLSSN NGSSADEGLE HWNPLKKIHS ADSSRRRSTS SQLNQPSNYH  60
   61 MHSSLHEEVS VGSSIASPSS RIPDKAISQY YETSPPSSTS SLSSNNQLMN SSVILSPGQF 120
  121 LPDDANAYGP KASLPPSEMP SHFHPLWSKS ASKDSNAFND PSAIPNPSPL FSSAYATRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [180-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGSLRNDKWN RSSFSEALSS SRFSRPQVGQ QQPLSSAFPF QPVKQPTEQP GSLHPFMQES  60
   61 KTSPFATRRP SLNTDHHGRP ILLSPLNYQN SSLNPSTPSP FGGSPVMHPP VSNLSPRTPA 120
  121 VPMSSDGHLA PAFDFLNENP IWSKRFSISS IKYSAPSTSN ASNIAPDSAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [350-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASSQFSVPF NAAAENINDT PDSVLANSPT PRHLPYTWSR HSTSGPSRST VLNPSTSRMS  60
   61 NYTGLESH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [418-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAQLSFKRRS NSATLPSLGS IRPFPISEHS PNINPLDEAA VEDEVKEEKS RFHLGHRRSS  60
   61 TADNGTLSSN VPLYPAYNSS PVQTRTSLFS SRLSKPSNPI VSSVSQANAP KNALHSMPSP 120
  121 TSLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [542-626]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLPSNLSDTQ YKKLYNLYLV EFKAGRADVF YIDDNIKLSL NLNDYVVVDA DRGQDLGRLI  60
   61 AQNLSQSEVA SHIEKIPSDR NGQLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.383	b.40.4	Nucleic acid-binding proteins
View	Download	0.372	d.109.1	Actin depolymerizing proteins
View	Download	0.352	a.77.1	DEATH domain
View	Download	0.461	d.205.1	GTP cyclohydrolase I feedback regulatory protein, GFRP
View	Download	0.413	b.61.3	D-aminopeptidase, middle and C-terminal domains

Predicted Domain #6

Region A:
Residues: [627-749]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLDGAILEGD TSQSLHPKRI LRKAQPHEVD QLIQKTQDEA QALLVCQAKV RQRKLPMEVL  60
   61 DGEYQWDRKK LTFYYHAKQR IDFRELVRDL FKVYKTRIWM CAVSGTNMSS PASINASTNQ 120
  121 FVL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.148742
Match:	PF04468.3
Description:	No description for PF04468.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.793	0.015	cytoplasm	d.58.4	Dimeric alpha+beta barrel
View	Download	0.790	0.014	cytoplasm	d.58.20	NAD-binding domain of HMG-CoA reductase
View	Download	0.867	0.006	molecular_function	d.89.1	Origin of replication-binding domain, RBD-like
View	Download	0.853	0.003	biological_process	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.779	0.001	biological_process	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits