| Protein: | YLA3_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLA3_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
203.0 | [0..97] | [471..204] |
|
|
199.0 | [0..112] | [445..2] |
|
|
195.0 | [0..25] | [471..8] |
|
|
191.0 | [0..55] | [471..144] |
|
|
190.0 | [0..82] | [471..11] |
|
|
189.0 | [0..63] | [471..618] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MSHKEPSAAE TSTVVHSEED KAFCIGTGAV ISEEREKEVL KNLQNSLTGK TAEENLNDEA 60
61 NHTSSDKSKS EDYQPSNVNV WALRKEKMIP KKHS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [95-233] |
1 11 21 31 41 51
| | | | | |
1 HVKQEKRFSK SLQLQDPNVW PSPEIAEKQV EDRKLSDDSQ KPLAPKANGK EKWVTITPNF 60
61 THTPISNRKS SRSRNDGSRR NGNGRRRGNY SSHGSNKRQT NYSREKDASR SIDSSNPSAE 120
121 YRDDINNTFG SQTVSSANG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [234-316] |
1 11 21 31 41 51
| | | | | |
1 KEVPQTSEDS SSQAPHHSSS SGHAPSQQGG NKHSYKKSDS QQSFHHKGRN TRKGQRHNNG 60
61 FYRNIANNIQ GPFPNYPVVV NGN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [317-475] |
1 11 21 31 41 51
| | | | | |
1 GVNPYLCDVQ AFLTSQLEYY FSIENLCKDM FLRKHMDDEG YVPLAFLASF NRIKSFSTDL 60
61 NLLHAACKAS DIIDVAIDLQ SPMSIKVRRK ETWSPWILPS ESRLKFEMAK YPQINSSSSM 120
121 SPLASSISNL TISPPFIPSS VDSIIKRDVQ TEVEDKLTV
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 1ytyA |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.16805061653531 | bayes_pls_golite062009 |
| nucleic acid binding | 3.10560219735181 | bayes_pls_golite062009 |
| DNA binding | 2.97348943886804 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.95301685898669 | bayes_pls_golite062009 |
| structural molecule activity | 2.70976099158766 | bayes_pls_golite062009 |
| binding | 2.29601364076827 | bayes_pls_golite062009 |
| transcription factor activity | 2.27922300995509 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.93130370844712 | bayes_pls_golite062009 |
| transcription activator activity | 0.782193398686323 | bayes_pls_golite062009 |
| transcription repressor activity | 0.67795138236883 | bayes_pls_golite062009 |
| RNA binding | 0.345456982950223 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.10854873707001 | bayes_pls_golite062009 |
| protein binding | 0.057263185425224 | bayes_pls_golite062009 |
