YRC Public Data Repository - Protein Structure Prediction

Protein:	COX4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX4_SCHPO.

Description	E-value	Query Range	Subject Range
COX4_YEAST - Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|190407127 - gi\|190407127\|gb\|EDV10394.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae RM11-1a] gi\|151943629 - gi\|151943629\|gb\|EDN61939.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae YJM789] COX4 - Subunit IV of cytochrome c oxidase, the terminal member of the mitochondrial inner membrane electron...	238.0	[0..12]	[164..4]
gi\|44984721, gi\|... - gi\|45198711\|ref\|NP_985740.1\| AFR193Wp [Ashbya gossypii ATCC 10895], gi\|44984721\|gb\|AAS53564.1\| AFR19... gi\|44984721 - gi\|44984721\|gb\|AAS53564.1\| AFR193Wp [Ashbya gossypii ATCC 10895]	219.0	[0..12]	[164..4]
gi\|50293263, gi\|... - gi\|50293263\|ref\|XP_449043.1\| unnamed protein product [Candida glabrata], gi\|49528356\|emb\|CAG62013.1\|... gi\|49528356\|emb\|... - unnamed protein product [Candida glabrata CBS 138]	211.0	[0..1]	[164..1]
gi\|68466934, gi\|... - gi\|68466934\|ref\|XP_722382.1\| hypothetical protein CaO19.9046 [Candida albicans SC5314], gi\|68466651\|... orf19.9046, orf1... - COX4 CGDID:CAL0004689 Assembly 19, Contig19-10119 (52934, 53407) CDS, translated using codon table 1...	208.0	[0..1]	[163..1]
gi\|39973437, gi\|... - gi\|39973437\|ref\|XP_368109.1\| hypothetical protein MG01135.4 [Magnaporthe grisea 70-15], gb\|EAA49477....	206.0	[0..1]	[158..31]
gi\|67536710, gi\|... - gi\|67536710\|ref\|XP_662129.1\| hypothetical protein AN4525.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	201.0	[0..2]	[158..3]
COX4_NEUCR - Cytochrome c oxidase subunit 4, mitochondrial OS=Neurospora crassa GN=cox-4 PE=3 SV=2 COX4_NEUCR - Cytochrome c oxidase subunit 4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /...	199.0	[0..25]	[157..23]
gi\|50306625, gi\|... - gi\|50306625\|ref\|XP_453286.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642420\|emb\|CAH0038... gi\|49642420 - gi\|49642420\|emb\|CAH00382.1\| KLLA0D05082p [Kluyveromyces lactis]	196.0	[0..6]	[163..1]
gi\|88181275, gi\|... - gi\|88181275\|gb\|EAQ88743.1\| hypothetical protein CHGG_05362 [Chaetomium globosum CBS 148.51], gi\|1161...	193.0	[0..24]	[164..23]
gi\|46111661, gi\|... - gi\|46111661\|ref\|XP_382888.1\| hypothetical protein FG02712.1 [Gibberella zeae PH-1], gi\|42545117\|gb\|E...	191.0	[0..9]	[156..462]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMNSMLRVS RQRAAVRSTV SLYRGFVSAS IRRNEQNVVK AAAQELANAK EPSDLIGPGG  60
   61 RDGEVPTDLE QATGLERYEL LSELSGRDAF DMKPLDASRK GTLTDPIMVT SLDPYRHIGC 120
  121 TGSPSGSHNL IWMTVYKDKL RRCPECGSVY KLKFMGDPNA EHSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1occF
Description:	Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	11.8078336041861	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	11.8078336041861	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	11.8078336041861	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.4955994709345	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.35533851539468	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.20400060522221	bayes_pls_golite062009
electron carrier activity	4.79439258177657	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.61075334342911	bayes_pls_golite062009
oxidoreductase activity	4.60275002826443	bayes_pls_golite062009
cation transmembrane transporter activity	4.37169157675849	bayes_pls_golite062009
ion transmembrane transporter activity	4.17914534558054	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.78062052867494	bayes_pls_golite062009
substrate-specific transporter activity	3.5925267150231	bayes_pls_golite062009
binding	1.8195473608185	bayes_pls_golite062009
catalytic activity	0.176396048613815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: