YRC Public Data Repository - Protein Structure Prediction

Protein:	CC21C_MOUSE, CC2...
Organism:	Mus musculus
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CC21C_MOUSE, CC2....

Description	E-value	Query Range	Subject Range
gi\|149045707, gi... - gi\|56606078\|ref\|NP_001008513.1\| small inducible cytokine A21 [Rattus norvegicus], gi\|55824743\|gb\|AAH...	116.0	[0..17]	[132..17]
gi\|51870709, gi\|... - gi\|52546718\|ref\|NP_001005258.1\| small inducible cytokine A21 [Canis lupus familiaris], gi\|51870709\|d...	114.0	[0..1]	[133..1]
gi\|7549787, gi\|3... - gi\|7549787\|ref\|NP_035465.1\| chemokine (C-C motif) ligand 21b (leucine) [Mus musculus], gi\|3169697\|gb...	110.0	[0..17]	[133..17]
CCL21 - chemokine (C-C motif) ligand 21 gi\|114624265, gi... - gi\|114624265\|ref\|XP_001164162.1\| PREDICTED: small inducible cytokine A21 isoform 3 [Pan troglodytes]... gi\|123982466, gi... - gi\|208965970\|dbj\|BAG72999.1\| chemokine (C-C motif) ligand 21 [synthetic construct], gi\|123997133\|gb\|...	107.0	[0..16]	[133..16]
gi\|187475069 - gi\|187475069\|gb\|ACD12054.1\| C-C chemokine ligand 21 [Macaca fascicularis] CCL21_MACMU - C-C motif chemokine 21 OS=Macaca mulatta GN=CCL21 PE=2 SV=1	106.0	[0..16]	[133..16]
CCL4_CHICK - C-C motif chemokine 4 homolog OS=Gallus gallus GN=CCL4 PE=3 SV=4	104.0	[0..2]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQMMTLSLL SLVLALCIPW TQGSDGGGQD CCLKYSQKKI PYSIVRGYRK QEPSLGCPIP  60
   61 AILFLPRKHS KPELCANPEE GWVQNLMRRL DQPPAPGKQS PGCRKNRGTS KSGKKGKGSK 120
  121 GCKRTEQTQP SRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1bo0A
Description:	MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chemokine activity	4.89918398910885	bayes_pls_golite062009
chemokine receptor binding	4.89918398910885	bayes_pls_golite062009
cytokine activity	4.83557343632317	bayes_pls_golite062009
G-protein-coupled receptor binding	4.76558176153203	bayes_pls_golite062009
binding	3.18185781962524	bayes_pls_golite062009
receptor binding	3.05971926490912	bayes_pls_golite062009
protein binding	2.65575365603289	bayes_pls_golite062009
interleukin-8 receptor binding	2.32709632592014	bayes_pls_golite062009
chemoattractant activity	1.20748075091352	bayes_pls_golite062009
signal transducer activity	0.0477394461694876	bayes_pls_golite062009
molecular transducer activity	0.0477394461694876	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: