| Protein: | SO0240 |
| Organism: | Shewanella oneidensis |
| Length: | 82 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0240.
| Description | E-value | Query Range |
Subject Range |
|
|
118.0 | [0..1] | [82..68] |
|
|
116.0 | [0..1] | [80..187] |
|
|
115.0 | [0..5] | [82..216] |
|
|
115.0 | [0..1] | [82..59] |
|
|
114.0 | [0..1] | [81..87] |
|
|
113.0 | [0..1] | [82..66] |
|
|
113.0 | [0..1] | [82..1] |
|
|
112.0 | [0..1] | [81..65] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MSDKIRTLQG RVTSNKMDKT ITVAIERQVK HPIYGKYIKR TTKIHAHDEA NQCNEGDVVA 60
61 IRECRPLSKT KSWTLVEVVS KA
|
| Detection Method: |  |
| Confidence: | 24.522879 |
| Match: | 1vs5Q |
| Description: | No description for 1vs5Q was found. |
| Term | Confidence | Notes |
| structural constituent of ribosome | 7.45319063235379 | bayes_pls_golite062009 |
| structural molecule activity | 6.87843523680097 | bayes_pls_golite062009 |
| nucleic acid binding | 2.61313484113692 | bayes_pls_golite062009 |
| binding | 2.25744085310968 | bayes_pls_golite062009 |
| DNA binding | 1.87254683997276 | bayes_pls_golite062009 |
| RNA binding | 1.76502371106766 | bayes_pls_golite062009 |
| translation regulator activity | 1.46320772716954 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.40718318783582 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.11569046031534 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.02592019321551 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.562603623565981 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.51569543713363 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.474251377131502 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.47336621289748 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.47336621289748 | bayes_pls_golite062009 |
| protein binding | 0.360033745054291 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.32253752994732 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.22548557495593 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0185639841733248 | bayes_pls_golite062009 |
