YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229901044, gi...
Organism:	Yersinia pestis Nepal516
Length:	865 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229901044, gi....

Description	E-value	Query Range	Subject Range
gi\|77976069, gi\|... - gi\|77976069\|ref\|ZP_00831602.1\| COG1049: Aconitase B [Yersinia frederiksenii ATCC 33641], gi\|23878675...	0.0	[1..865]	[1..865]
gi\|77977272 - gi\|77977272\|ref\|ZP_00832725.1\| COG1049: Aconitase B [Yersinia intermedia ATCC 29909]	0.0	[1..865]	[14..878]
gi\|238797677, gi... - gi\|77962127\|ref\|ZP_00825952.1\| COG1049: Aconitase B [Yersinia mollaretii ATCC 43969], gi\|238797677\|r...	0.0	[1..865]	[1..865]
gi\|238785078, gi... - gi\|77957554\|ref\|ZP_00821607.1\| COG1049: Aconitase B [Yersinia bercovieri ATCC 43970], gi\|238785078\|r...	0.0	[1..865]	[1..865]
gi\|75258889 - gi\|75258889\|ref\|ZP_00730279.1\| COG1049: Aconitase B [Escherichia coli E22]	0.0	[1..865]	[1..865]
gi\|28807493, gi\|... - gi\|28899269\|ref\|NP_798874.1\| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Vibr... gi\|28807493 - gi\|28807493\|dbj\|BAC60758.1\| aconitate hydratase 2 [Vibrio parahaemolyticus RIMD 2210633]	0.0	[1..863]	[1..863]
gi\|227080785, gi... - gi\|227080785\|ref\|YP_002809336.1\| aconitate hydratase 2 [Vibrio cholerae M66-2], gi\|227008673\|gb\|ACP0... gi\|229505772, gi... - gi\|229505772\|ref\|ZP_04395282.1\| aconitate hydratase 2 [Vibrio cholerae BX 330286], gi\|229357995\|gb\|E... gi\|254846541, gi... - gi\|75828888\|ref\|ZP_00758219.1\| COG1049: Aconitase B [Vibrio cholerae MO10], gi\|254850836\|ref\|ZP_0524... gi\|229512867, gi... - gi\|229512867\|ref\|ZP_04402334.1\| aconitate hydratase 2 [Vibrio cholerae TMA 21], gi\|229350116\|gb\|EEO1... gi\|227116979, gi... - gi\|75825968\|ref\|ZP_00755403.1\| COG1049: Aconitase B [Vibrio cholerae O395], gi\|227116979\|ref\|YP_0028... gi\|229519596, gi... - gi\|229519596\|ref\|ZP_04409039.1\| aconitate hydratase 2 [Vibrio cholerae RC9], gi\|229344285\|gb\|EEO0926... gi\|9655036, gi\|1... - gi\|9655036\|gb\|AAF93771.1\| aconitate hydratase 2 [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1... gi\|75822539, gi\|... - gi\|75822539\|ref\|ZP_00752146.1\| COG1049: Aconitase B [Vibrio cholerae RC385], gi\|254224245\|ref\|ZP_049... gi\|229520894, gi... - gi\|229520894\|ref\|ZP_04410316.1\| aconitate hydratase 2 [Vibrio cholerae TM 11079-80], gi\|229342127\|gb... gi\|11354383 - pir\|\|C82303 aconitate hydratase 2 VC0604 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|229338839, gi... - gi\|229525258\|ref\|ZP_04414663.1\| aconitate hydratase 2 [Vibrio cholerae bv. albensis VL426], gi\|22933... gi\|229371538, gi... - gi\|229608883\|ref\|YP_002879531.1\| 2-methylisocitrate dehydratase [Vibrio cholerae MJ-1236], gi\|229371... gi\|254291258, gi... - gi\|254291258\|ref\|ZP_04962053.1\| aconitate hydratase 2 [Vibrio cholerae AM-19226], gi\|197751397\|ref\|Y... gi\|148875390, gi... - gi\|153829132\|ref\|ZP_01981799.1\| aconitate hydratase 2 [Vibrio cholerae 623-39], gi\|148875390\|gb\|EDL7... gi\|149740635, gi... - gi\|153825698\|ref\|ZP_01978365.1\| aconitate hydratase 2 [Vibrio cholerae MZO-2], gi\|149740635\|gb\|EDM54... gi\|125620608, gi... - gi\|254226857\|ref\|ZP_04920427.1\| aconitate hydratase 2 [Vibrio cholerae V51], gi\|225354468\|ref\|YP_002... gi\|121591125, gi... - gi\|121591125\|ref\|ZP_01678433.1\| aconitate hydratase 2 [Vibrio cholerae 2740-80], gi\|121547021\|gb\|EAX... gi\|124121162, gi... - gi\|153803304\|ref\|ZP_01957890.1\| aconitate hydratase 2 [Vibrio cholerae MZO-3], gi\|124121162\|gb\|EAY39... gi\|153819855, gi... - gi\|153819855\|ref\|ZP_01972522.1\| aconitate hydratase 2 [Vibrio cholerae NCTC 8457], gi\|126509601\|gb\|E... gi\|229509194, gi... - gi\|229509194\|ref\|ZP_04398679.1\| aconitate hydratase 2 [Vibrio cholerae B33], gi\|229353766\|gb\|EEO1870...	0.0	[1..863]	[1..863]
gi\|91187549, gi\|... - gi\|91228900\|ref\|ZP_01262801.1\| aconitate hydratase [Vibrio alginolyticus 12G01], gi\|91187549\|gb\|EAS7...	0.0	[1..863]	[1..863]
gi\|161648989, gi... - gi\|67542800\|ref\|ZP_00420735.1\| Aconitate hydratase 2 [Burkholderia vietnamiensis G4], gi\|67536013\|gb...	0.0	[1..859]	[1..859]
gi\|37527487, gi\|... - gi\|37527487\|ref\|NP_930831.1\| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Phot...	0.0	[1..865]	[1..865]

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Predicted Domain #1

Region A:
Residues: [1-865]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEEYRKHVA ERAAEGIVPK PLDASQMAAL VESLKNPPAG EEEFLLDLLT NRVPPGVDEA  60
   61 AYVKAGFLAA IAKGEAHSPL ITAEKAIELL GTMQGGYNIH PLIDALDNEQ LAPIAAKALS 120
  121 HTLLMFDNFY DVEDKAKAGN PYAKQIIQSW ADAEWYLSRP ALAEKLTVTV FKVTGETNTD 180
  181 DLSPAPDAWS RPDIPLHALA MLKNAREGIH PDQPGSVGPI KQIEELNKKG FPLAYVGDVV 240
  241 GTGSSRKSAT NSVLWFMGDD IPYVPNKRGG GVVLGSKIAP IFFNTMEDAG ALPIEVDVAK 300
  301 LNMGDVIDIF PYQGEVRRHD TGEVLATFEL KTDVLLDEVR AGGRIPLIVG RGLTTKARES 360
  361 LGLPVSDVFR VPKPVAKSNK GFSLAQKMVG RACGVAGVRP GEYCEPKMTS VGSQDTTGPM 420
  421 TRDELKDLAC LGFSADLVMQ SFCHTAAYPK PVDVTTHHTL PDFIMNRGGV SLRPGDGIIH 480
  481 SWLNRMLLPD TVGTGGDSHT RFPIGISFPA GSGLVAFAAA TGVMPLDMPE SVLVRFKGEM 540
  541 QPGITLRDLV HAIPYYAIQE GLLTVEKKGK KNIFSGRILE IEGLPELKVE QAFELADASA 600
  601 ERSAAGCTIK LDKAPITEYL QSNVVLLKWM IAEGYGDRRT LERRINGMES WLANPSLLEG 660
  661 DADAEYAAVI EIDLAEITQP ILCAPNDPDD ARLLSDVANS KIDEVFIGSC MTNIGHFRAA 720
  721 GKLLDQHKGQ LPTRLWVAPP TKMDAAQLTE EGYYSVFGKS GARIEIPGCS LCMGNQARVA 780
  781 DGATVVSTST RNFPNRLGTG ANVYLASAEL AAIASLLGRL PTPDEYQTYM AQVDKTAEDT 840
  841 YRYLNFDQLS QYTDKADGVI FQTAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1l5jA
Description:	Aconitase B, N-terminal domain; Aconitase B, second N-terminal domain; Aconitase B, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-isopropylmalate dehydratase activity	11.6597692115322	bayes_pls_golite062009
aconitate hydratase activity	4.71920913892019	bayes_pls_golite062009
structural constituent of ribosome	2.93956285477489	bayes_pls_golite062009
catalytic activity	2.4040324437254	bayes_pls_golite062009
carbon-oxygen lyase activity	2.08349115784849	bayes_pls_golite062009
hydro-lyase activity	2.04845291489052	bayes_pls_golite062009
lyase activity	2.0080619912194	bayes_pls_golite062009
nucleic acid binding	1.38665120581594	bayes_pls_golite062009
binding	1.03925793375799	bayes_pls_golite062009
structural molecule activity	0.870913754566634	bayes_pls_golite062009
DNA binding	0.682819555450327	bayes_pls_golite062009
mRNA binding	0.52321922280827	bayes_pls_golite062009
RNA binding	0.41480744631042	bayes_pls_golite062009
protein binding	0.232638130896339	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: