YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104337
Organism:	Pseudomonas aeruginosa PACS2
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104337.

Description	E-value	Query Range	Subject Range
gi\|67668083, gi\|... - gi\|67668083\|ref\|ZP_00465278.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	3.0E-61	[6..447]	[1021..1478]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	7.0E-56	[1..438]	[424..859]
gi\|152988771, gi... - gi\|94417710\|ref\|ZP_01297527.1\| hypothetical protein PaerP_01000488 [Pseudomonas aeruginosa PA7], gi\|...	6.0E-54	[1..448]	[1..448]
gi\|9657525, gi\|1... - gi\|9657525\|gb\|AAF96050.1\| glycerol-3-phosphate transporter [Vibrio cholerae O1 biovar eltor str. N16... gi\|11277446 - pir\|\|C82495 glycerol-3-phosphate transporter VCA0137 [imported] - Vibrio cholerae (strain N16961 ser...	3.0E-53	[1..433]	[18..451]
gi\|75824929 - gi\|75824929\|ref\|ZP_00754365.1\| COG2271: Sugar phosphate permease [Vibrio cholerae O395]	9.0E-52	[1..433]	[5..438]
gi\|84385639, gi\|... - gi\|84385639\|ref\|ZP_00988670.1\| glycerol-3-phosphate transporter [Vibrio splendidus 12B01], gi\|843796...	2.0E-51	[9..447]	[2..442]
gi\|75822876, gi\|... - gi\|75822876\|ref\|ZP_00752430.1\| COG2271: Sugar phosphate permease [Vibrio cholerae RC385], gi\|1162161...	2.0E-51	[1..433]	[4..437]
gi\|147671835, gi... - gi\|147671835\|ref\|YP_001214842.1\| sn-glycerol-3-phosphate transporter [Vibrio cholerae O395], gi\|1463... gi\|75814297 - gi\|75814297\|ref\|ZP_00744907.1\| COG2271: Sugar phosphate permease [Vibrio cholerae V52] gi\|75830926, gi\|... - gi\|75830926\|ref\|ZP_00760196.1\| COG2271: Sugar phosphate permease [Vibrio cholerae MO10], gi\|11618983...	4.0E-51	[1..433]	[1..434]
tr\|Q87UQ8\|Q87UQ8... - Glycerol-3-phosphate transporter OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=glpT PE=4 SV=... gi\|28855605, gi\|... - gi\|28872350\|ref\|NP_794969.1\| sn-glycerol-3-phosphate transporter [Pseudomonas syringae pv. tomato st...	4.0E-51	[1..437]	[1..437]
gi\|85834510, gi\|... - gi\|86147729\|ref\|ZP_01066037.1\| glycerol-3-phosphate transporter [Vibrio sp. MED222], gi\|85834510\|gb\|...	7.0E-51	[9..433]	[2..427]

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Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIFRPAPH QAPLPDAEVD STYRRLRWQI FAGIFIGYAG YYLLRKNFSL AMPYLIEDGY  60
   61 SRGQLGVAMS AIAIAYGLSK FIMGLVSDRS NPRVFLPFGL LVSAAVMFIF GFAHWATSSV 120
  121 AIMFVLLFIN GWAQGMGWPP SGRTMVHWWS QKERGSVVSV WNVAHNVGGG LIGPLFLLGL 180
  181 ALFGDWRSAF YVPAIVAVGV AVFAYFAMRD TPQSCGLPPI EKHKDDYPEG YDEHHERELS 240
  241 TKEIFVTYVL RNKLLWYIAL ANVFVYLLRY GVLDWAPTYL KEAKHFNVDK SSWAYFFYEW 300
  301 AGIPGTLLCG WLSDKLFKGN RGATGVVFMI LVTVGTLIYW LNPAGNPAID MAALIMIGFL 360
  361 IYGPVMLIGL QALELAPKKA AGTAAGFTGL FGYLGGSVAA NALVGYTVDH FGWDGGFKLL 420
  421 IGACLLAILF LCLTLRKPAV QAAPQQAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glucose-6-phosphate transmembrane transporter activity	8.42101508058771	bayes_pls_golite062009
hexose phosphate transmembrane transporter activity	8.42101508058771	bayes_pls_golite062009
glycerol transmembrane transporter activity	7.11654923455995	bayes_pls_golite062009
alcohol transmembrane transporter activity	6.7545566917184	bayes_pls_golite062009
polyol transmembrane transporter activity	6.7545566917184	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	6.56587510931539	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
cation transmembrane transporter activity	3.88180006470231	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	3.5078894802599	bayes_pls_golite062009
organic anion transmembrane transporter activity	3.3413526350788	bayes_pls_golite062009
cation:sugar symporter activity	2.99050613058546	bayes_pls_golite062009
sugar:hydrogen symporter activity	2.99050613058546	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	2.62141276633776	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
sugar transmembrane transporter activity	2.47557586092261	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
solute:hydrogen symporter activity	2.10485633822652	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
binding	1.26757615356623	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: