YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104343
Organism:	Pseudomonas aeruginosa PACS2
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104343.

Description	E-value	Query Range	Subject Range
gi\|4760367 - gi\|4760367\|gb\|AAD29107.1\|AF053463_1 exopolyphosphatase; PPX [Pseudomonas aeruginosa] gi\|115588609, gi... - gi\|53726702\|ref\|ZP_00347668.1\| COG0248: Exopolyphosphatase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1...	0.0	[1..506]	[1..506]
gi\|82716216, gi\|... - gi\|82736740\|ref\|ZP_00899596.1\| exopolyphosphatase [Pseudomonas putida F1], gi\|82716216\|gb\|EAP51274.1...	0.0	[4..506]	[42..543]
gi\|67155422 - gi\|67155422\|ref\|ZP_00417050.1\| Exopolyphosphatase [Azotobacter vinelandii AvOP] gi\|67087223, gi\|... - gi\|67155422\|ref\|ZP_00417050.1\| Exopolyphosphatase [Azotobacter vinelandii AvOP], gi\|67087223\|gb\|EAM0...	0.0	[4..506]	[33..535]
gi\|70733268, gi\|... - gi\|70733268\|ref\|YP_263041.1\| exopolyphosphatase [Pseudomonas fluorescens Pf-5], gi\|68347567\|gb\|AAY95...	0.0	[4..505]	[12..512]
gi\|94417716 - gi\|94417716\|ref\|ZP_01297533.1\| hypothetical protein PaerP_01000494 [Pseudomonas aeruginosa PA7]	0.0	[1..506]	[1..506]
gi\|95113224 - gi\|95113224\|emb\|CAK17952.1\| exopolyphosphatase (ExopolyPase) (Metaphosphatase) [Pseudomonas entomoph... gi\|95113224, gi\|... - gi\|95113224\|emb\|CAK17952.1\| exopolyphosphatase (ExopolyPase) (Metaphosphatase) [Pseudomonas entomoph...	0.0	[3..506]	[27..529]
gi\|77461684, gi\|... - gi\|77461684\|ref\|YP_351191.1\| Ppx/GppA phosphatase [Pseudomonas fluorescens Pf0-1], gi\|77385687\|gb\|AB...	0.0	[6..505]	[1..499]
gi\|26991892, gi\|... - gi\|26991892\|ref\|NP_747317.1\| Ppx/GppA phosphatase [Pseudomonas putida KT2440], gi\|24987014\|gb\|AAN707...	0.0	[6..506]	[1..500]
gi\|89214062 - gi\|89214062\|gb\|ABD64374.1\| exopolyphosphatase [Pseudomonas chlororaphis] gi\|89214062\|gb\|A... - exopolyphosphatase [Pseudomonas chlororaphis]	0.0	[6..505]	[1..499]
gi\|66043564, gi\|... - gi\|66043564\|ref\|YP_233405.1\| exopolyphosphatase [Pseudomonas syringae pv. syringae B728a], gi\|632542...	0.0	[5..506]	[26..526]

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Predicted Domain #1

Region A:
Residues: [1-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQSMPQKP AEAFPLIAAL DLGSNSFHLC LAKANIHGEV RILERLGEKV QLAAGLDEER  60
   61 NLSEEATQRG LDCLRRFAQF ISGMPQGSVR VVATNALREA RNRSDFIRRA EEVLGHPVEV 120
  121 ISGREEARLI YLGVANSMPD SGGRRLVSDI GGGSTEFIIG QGFESELRES LQMGCVSYTQ 180
  181 RYFRDGKITP ARYAQAYTAA RLELMGIENS LRRLGWQQAV GASGTIRAVA LAIKAGGHGN 240
  241 GEISPDGLAW LKRKVLKLGD VEKLDLEGIK PDRRTIFPAG LAILEAIFDA LELEQMVHSE 300
  301 GALREGVLYD LVGRHQHEDV RERTISSLMQ RYHVDPEQAS RVEAKALKVL AEVGDAWELN 360
  361 GELHRDLLSW GARVHEIGLD IAHYHYHKHG AYLIEHSDLA GFSRQDQQML SLLVRGHRRN 420
  421 IPADKLAEFA EEGDKLVRLC IVLRFAILFH HIRGTQEMPS VRLKAEPKSL SVTFPEGWLE 480
  481 ANPLTQADFA QEAEWLKRVG YSLNVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	1u6zA
Description:	Structure of an E. coli Exopolyphosphatase: Insight into the processive hydrolysis of polyphosphate and its regulation
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
kinase activity	1.87760960987608	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.75615325783105	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.59605394946105	bayes_pls_golite062009
binding	1.25460196265758	bayes_pls_golite062009
polyphosphate kinase activity	1.21204737821821	bayes_pls_golite062009
protein binding	1.01732312833155	bayes_pls_golite062009
phosphoric diester hydrolase activity	0.924155015104714	bayes_pls_golite062009
cyclic-nucleotide phosphodiesterase activity	0.641327801104871	bayes_pls_golite062009
transferase activity	0.569421514787167	bayes_pls_golite062009
3',5'-cyclic-nucleotide phosphodiesterase activity	0.532800957697682	bayes_pls_golite062009
catalytic activity	0.296484721581333	bayes_pls_golite062009
adenyl nucleotide binding	0.232254847278069	bayes_pls_golite062009
ATP binding	0.20090931123533	bayes_pls_golite062009
adenyl ribonucleotide binding	0.164881755458122	bayes_pls_golite062009
protein kinase activity	0.0746500139691637	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: