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View Structure Prediction Details

Protein: RT18B_MOUSE
Organism: Mus musculus
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT18B_MOUSE.

Description E-value Query
Range		 Subject
Range
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1
 396.0 [0..1] [254..1]
gi|208966778 - gi|208966778|dbj|BAG73403.1| mitochondrial ribosomal protein S18B [synthetic construct]
MRPS18B - mitochondrial ribosomal protein S18B
 394.0 [0..1] [254..1]
RT18B_PIG - 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=1 SV=1
 389.0 [0..1] [254..1]
gi|74188911 - gi|74188911|dbj|BAE39228.1| unnamed protein product [Mus musculus]
 389.0 [0..1] [254..1]
RT18B_MACMU - 28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta GN=MRPS18B PE=3 SV=1
 387.0 [0..1] [254..1]
RT18B_BOVIN - 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B PE=1 SV=2
 384.0 [0..1] [254..1]

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Predicted Domain #1
Region A:
Residues: [1-88] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLRHTLL KLVPTLLRSS YVAQVPLQTL CTRGPPEEDA PSSLPVSPYE SEPWKYLDSE  60
   61 EYHNRYGSRP VWADYRRNHK GGVPPQRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-167] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKTCIRNNKV AGNPCPICRD HKLHVDFRNV KLLEQFVCAH TGIIFHAPYT GVCMKQHKKL  60
   61 TQAIQKAREC GLLSYYVPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.522879
Match: 1vs5R
Description: No description for 1vs5R was found.

Predicted functions:

Term Confidence Notes
structural molecule activity 0.36378695673226 bayes_pls_golite062009
structural constituent of ribosome 0.351838444516321 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [168-254] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEPRDADFGT VHGAVSVTPP APTLLSGEPW YPWYSWQQPP ERELSRLRRL YQGNLLEESG  60
   61 PPPESMPEMP TTPPAESSIE QPGSQSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle