| Protein: | RT18B_MOUSE |
| Organism: | Mus musculus |
| Length: | 254 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT18B_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
396.0 | [0..1] | [254..1] |
|
|
394.0 | [0..1] | [254..1] |
|
|
389.0 | [0..1] | [254..1] |
|
|
389.0 | [0..1] | [254..1] |
|
|
387.0 | [0..1] | [254..1] |
|
|
384.0 | [0..1] | [254..1] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MAAPLRHTLL KLVPTLLRSS YVAQVPLQTL CTRGPPEEDA PSSLPVSPYE SEPWKYLDSE 60
61 EYHNRYGSRP VWADYRRNHK GGVPPQRT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.219 | 0.059 | mitochondrion | a.118.8 | TPR-like |
| View | Download | 0.341 | 0.016 | structural constituent of ribosome | a.22.1 | Histone-fold |
| View | Download | 0.275 | 0.003 | intracellular | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.522 | 0.002 | intracellular | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.207 | 0.001 | intracellular | a.59.1 | PAH2 domain |
|
Region A: Residues: [89-167] |
1 11 21 31 41 51
| | | | | |
1 RKTCIRNNKV AGNPCPICRD HKLHVDFRNV KLLEQFVCAH TGIIFHAPYT GVCMKQHKKL 60
61 TQAIQKAREC GLLSYYVPQ
|
| Detection Method: | |
| Confidence: | 23.522879 |
| Match: | 1vs5R |
| Description: | No description for 1vs5R was found. |
| Term | Confidence | Notes |
| structural molecule activity | 0.36378695673226 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.351838444516321 | bayes_pls_golite062009 |
|
Region A: Residues: [168-254] |
1 11 21 31 41 51
| | | | | |
1 VEPRDADFGT VHGAVSVTPP APTLLSGEPW YPWYSWQQPP ERELSRLRRL YQGNLLEESG 60
61 PPPESMPEMP TTPPAESSIE QPGSQSA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.291 | 0.145 | extracellular space | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.307 | 0.070 | structural constituent of ribosome | a.4.1 | Homeodomain-like |
| View | Download | 0.204 | 0.064 | mitochondrion | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.231 | 0.002 | intracellular | a.130.1 | Chorismate mutase II |
