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View Structure Prediction Details

Protein: Dscam-PAZ
Organism: Drosophila melanogaster
Length: 2035 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAZ.

Description E-value Query
Range
Subject
Range
Dscam-PBA - The gene Down syndrome cell adhesion molecule is referred to in FlyBase by the symbol Dmel\Dscam (CG...
1583.0 [0..3] [2035..3]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVPQS YTVNVMDESI LRGNSAILKC HIPSFVADFI VVDSWVEDEE 180
  181 RVIYPQEDIA ESDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
  241 ITEPIGSVSP KISNSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 2v5sA
Description: No description for 2v5sA was found.

Predicted Domain #2
Region A:
Residues: [257-900]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKHVKVKRL LSLSLLCPAQ AYPQPISRWY KFIEGTTRKQ AVVLNDRVKQ VSGTLIIKDA  60
   61 VVEDSGKYLC VVNNSVGGES VETVLTVTAP LSAKIDPPTQ TVDFGRPAVF TCQYTGNPIK 120
  121 TVSWMKDGKA IGHSEPVLRI ESVKKEDKGM YQCFVRNDQE SAEASAELKL GGRFDPPVIR 180
  181 QAFQEETMEP GPSVFLKCVA GGNPTPEISW ELDGKKIANN DRYQVGQYVT VNGDVVSYLN 240
  241 ITSVHANDGG LYKCIAKSKV GVAEHSAKLN VYGLPYIRQM EKKAIVAGET LIVTCPVAGY 300
  301 PIDSIVWERD NRALPINRKQ KVFPNGTLII ENVERNSDQA TYTCVAKNQE GYSARGSLEV 360
  361 QVMVAPKIAP FDFGDEPSNF GESASVQCLV TSGDFPVSFA WLFNGREINE NVYDVSMVKL 420
  421 GKKISALSID IVRDHHAGNY TCVAVNRATS VNFTAELVVN VPPRWILEPT DKAFAQGSDA 480
  481 KVECKADGFP KPQVTWKKAV GDTPGEYKDL KKSDNIRVEE GTLHVDNIQK TNEGYYLCEA 540
  541 INGIGSGLSA VIMISVQAPP EFTEKLRNQT ARRGEPAVLQ CEAKGEKPIG ILWNMNNMRL 600
  601 DPKNDNRYTI REEILSTGVM SSLSIKRTER SDSALFTCVA TNAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.522879
Match: 1e07A
Description: Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [901-1373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDDASINMI VQEVPEMPYA LKVLDKSGRS VQLSWAQPYD GNSPLDRYII EFKRSRASWS  60
   61 EIDRVIVPGH TTEAQVQKLS PATTYNIRIV AENAIGTSQS SEAVTIITAE EAPSGKPQNI 120
  121 KVEPVNQTTM RVTWKPPPRT EWNGEILGYY VGYKLSNTNS SYVFETINFI TEEGKEHNLE 180
  181 LQNLRVYTQY SVVIQAFNKI GAGPLSEEEK QFTAEGTPSQ PPSDTACTTL TSQTIRVGWV 240
  241 SPPLESANGV IKTYKVVYAP SDEWYDETKR HYKKTASSDT VLHGLKKYTN YTMQVLATTA 300
  301 GGDGVRSVPI HCQTEPDVPE APTDVKALVM GNAAILVSWR PPAQPNGIIT QYTVYSKAEG 360
  361 AETETKTQKV PHYQMSFEAT ELEKNKPYEF WVTASTTIGE GQQSKSIVAM PSDQVPAKIA 420
  421 SFDDTFTATF KEDAKMPCLA VGAPQPEITW KIKGVEFSAN DRMRVLPDGS LLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 2v5yA
Description: No description for 2v5yA was found.

Predicted Domain #4
Region A:
Residues: [1374-1604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSVNRQDAGD YSCHAENSIA KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT  60
   61 APLHGYTLHY KPEFGEWETS EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN 120
  121 TRTKGQKPKL PEKPRFIEVS SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV 180
  181 KPDNNYVVLD LEPATWYNLR ITAHNSAGFT VAEYDFATLT VTGGTIAPLD D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.09691
Match: 1fnfA
Description: FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1605-1832]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGHGNVHTR IRLPAWMPEW LDLNFMVPLI ATVVVVAVGI CVVCVALSRR RADDMRGGQK  60
   61 DVYYDVVYNQ TMGPGATLDK RRPDLRDELG YIAPPNRKLP PVPGSNYNTC DRIKRGRGGL 120
  121 RSNHSTWDPR RNPNLYEELK APPVPMHGNH YGHAHGNAEC HYRHPGMEDE ICPYATFHLL 180
  181 GFREEMDPTK AMNFQTFPHQ NGHAGPVPGH AGTMLPPGHP GHVHSRSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1833-2035]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSMPRANRY QRKNSQGGQS SIYTPAPEYD DPANCAEEDQ YRRYTRVNSQ GGSLYSGPGP  60
   61 EYDDPANCAP EEDQYGSQYG GPYGQPYDHY GSRGSMGRRS IGSARNPGNG SPEPPPPPPR 120
  121 NHDMSNSSFN DSKESNEISE AECDRDHGPR GNYGAVKRSP QPKDQRTTEE MRKLIERNET 180
  181 GPKQLQLQQA NGAGFTAYDT MAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle