| Protein: | Dscam-PBD |
| Organism: | Drosophila melanogaster |
| Length: | 2030 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBD.
| Description | E-value | Query Range |
Subject Range |
|
|
1541.0 | [0..3] | [2030..3] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVN
|
| Detection Method: |  |
| Confidence: | 82.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [139-246] |
1 11 21 31 41 51
| | | | | |
1 QFYEAEIMTE YVIRGNAAVL KCSIPSFVAD FVRVESWIDD EGNVLSFSDN YDGKYLVLPS 60
61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPVGRVS
|
| Detection Method: | |
| Confidence: | 21.69897 |
| Match: | 2ec8A |
| Description: | No description for 2ec8A was found. |
|
Region A: Residues: [247-908] |
1 11 21 31 41 51
| | | | | |
1 PKFPNTLTSS SFTGDEGSSQ TLLCPAQAYP APLFRWYKFI EGTTRKQAVV LNDRVKQVSG 60
61 TLIIKDAVVE DSGKYLCVVN NSVGGESVET VLTVTAPLSA KIDPPTQTVD FGRPAVFTCQ 120
121 YTGNPIKTVS WMKDGKAIGH SEPVLRIESV KKEDKGMYQC FVRNDQESAE ASAELKLGGR 180
181 FDPPVIRQAF QEETMEPGPS VFLKCVAGGN PTPEISWELD GKKIANNDRY QVGQYVTVNG 240
241 DVVSYLNITS VHANDGGLYK CIAKSKVGVA EHSAKLNVYG LPYIRQMEKK AIVAGETLIV 300
301 TCPVAGYPID SIVWERDNRA LPINRKQKVF PNGTLIIENV ERNSDQATYT CVAKNQEGYS 360
361 ARGSLEVQVM VPPKLAPLPV NSPLYVGDYY QLTCAVVHGD APFNITWYYN NEPAGDLAGV 420
421 TILMHGRRSS SLNIESVGGD HAGNYTCKGA NRAGETTAET HLSVKVPPRW ILEPTDKAFA 480
481 QGSDAKVECK ADGFPKPQVT WKKAVGDTPG EYKDLKKSDN IRVEEGTLHV DNIQKTNEGY 540
541 YLCEAINGIG SGLSAVIMIS VQAPPEFTEK LRNQTARRGE PAVLQCEAKG EKPIGILWNM 600
601 NNMRLDPKND NRYTIREEIL STGVMSSLSI KRTERSDSAL FTCVATNAFG SDDASINMIV 660
661 QE
|
| Detection Method: | |
| Confidence: | 56.221849 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [909-1368] |
1 11 21 31 41 51
| | | | | |
1 VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID RVIVPGHTTE 60
61 AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIITAEEAP SGKPQNIKVE PVNQTTMRVT 120
121 WKPPPRTEWN GEILGYYVGY KLSNTNSSYV FETINFITEE GKEHNLELQN LRVYTQYSVV 180
181 IQAFNKIGAG PLSEEEKQFT AEGTPSQPPS DTACTTLTSQ TIRVGWVSPP LESANGVIKT 240
241 YKVVYAPSDE WYDETKRHYK KTASSDTVLH GLKKYTNYTM QVLATTAGGD GVRSVPIHCQ 300
301 TEPDVPEAPT DVKALVMGNA AILVSWRPPA QPNGIITQYT VYSKAEGAET ETKTQKVPHY 360
361 QMSFEATELE KNKPYEFWVT ASTTIGEGQQ SKSIVAMPSD QVPAKIASFD DTFTATFKED 420
421 AKMPCLAVGA PQPEITWKIK GVEFSANDRM RVLPDGSLLI
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1369-1591] |
1 11 21 31 41 51
| | | | | |
1 KSVNRQDAGD YSCHAENSIA KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT 60
61 APLHGYTLHY KPEFGEWETS EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN 120
121 TRTKGQKPKL PEKPRFIEVS SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV 180
181 KPDNNYVVLD LEPATWYNLR ITAHNSAGFT VAEYDFATLT VTG
|
| Detection Method: | |
| Confidence: | 26.221849 |
| Match: | 1fnfA |
| Description: | FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1592-1800] |
1 11 21 31 41 51
| | | | | |
1 GTIAPLDDGS GHGNVHTRIR LPAWMPEWLD LNFMVPLIAT VVVVAVGICV VCVALSRRRA 60
61 DDMRGGQKDV YYDVVYNQTM GPGATLDKRR PDLRDELGYI APPNRKLPPV PGSNYNTCDR 120
121 IKRGRGGLRS NHSTWDPRRN PNLYEELKAP PVPMHGNHYG HAHGNAECHY RHPGMEDEIC 180
181 PYATFHLLGF REEMDPTKAM NFQTFPHQN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1801-2030] |
1 11 21 31 41 51
| | | | | |
1 GHAGPVPGHA GTMLPPGHPG HVHSRSGSQS MPRANRYQRK NSQGGQSSIY TPAPEYDDPA 60
61 NCAEEDQYRR YTRVNSQGGS LYSGPGPEYD DPANCAPEED QYGSQYGGPY GQPYDHYGSR 120
121 GSMGRRSIGS ARNPGNGSPE PPPPPPRNHD MSNSSFNDSK ESNEISEAEC DRDHGPRGNY 180
181 GAVKRSPQPK DQRTTEEMRK LIERNETGPK QLQLQQANGA GFTAYDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
